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Search DetailsUeda Hiroki
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Professor
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Dr. Hiroki R. Ueda was born in Fukuoka, Japan, in 1975. He graduated from the Faculty of Medicine, the University of Tokyo in 2000, and obtained his Ph.D in 2004 from the same university. He was appointed as a team leader in RIKEN Center for Developmental Biology (CDB) from 2003 and promoted to be a project leader at RIKEN CDB in 2009, and to be a group director at RIKEN Quantitative Biology Center (QBiC) in 2011. He became a professor of Graduate School of Medicine, the University of Tokyo in 2013. He is currently appointed as a team leader in RIKEN Center for Biosystems Dynamics Research (BDR), an affiliate professor in Graduate School of Information Science and Technology and an principle investigator in IRCN (International Research Center for Neurointelligence) in the University of Tokyo, an invited professor in Osaka University, and a visiting professor in Tokushima University.
He has an expertise in systems biology and focus on chronobiology by investigating mammalian circadian clocks and sleep/wake cycles. He determined a basic structure of a transcriptional circuit of mammalian circadian clocks and identified multiple delayed negative feedback motifs (Ueda et al, 2002, Ueda et al, 2005, Ukai-Tadenuma et al, 2008, Ukai-Tadenuma 2011). He also focused on long-standing and unsolved questions in chronobiology and found that a singularity behavior (i.e. temporal stopping of circadian clocks) is caused by desynchronization of multiple cellular circadian oscillators (Ukai et al, 2007), and that temperature-insensitive biochemical reactions underlie temperature compensation of mammalian circadian clocks (Isojima et al, 2009, Shinohara et al, 2017). He also invented molecular-timetable methods to detect the circadian time of the body by measuring a snapshot information of circadian clocks (Ueda et al, 2004, Minami eet al, 2009, Kasukawa et al, 2012, Narumi et al, 2016). For sleep/wake cycles, he found that Ca2+ and CaMKII-dependent hyperpolarization pathways underlie sleep homeostasis and proposed phosphorylation hypothesis of sleep (Tatsuki et al, 2016, Sunagawa et al, 2016, Tatsuki et al, 2017, Ode et al, 2017, Shi et al, 2017) and that muscarinic receptors, M1 and M3, as essential genes for REM sleep (Niwa et al, 2018). To accelerate these studies, he also invented whole-brain and whole-body clearing and imaging methods called CUBIC (Susaki et al, 2014, Tainaka et al, 2014, Susaki et al, 2015, Susaki et al, 2016, Tainaka et al, 2016, Kubota et al, 2017, Nojima et al, 2017, Murakami et al, 2018, Tainaka et al, 2018), as well as the next-generation mammalian genetics (Susaki et al, 2017) such as Triple-CRISPR(Sunagawa et al, 2016), ES-mice (Ode et al, 2017, Ukai et al, 2017) and SSS methods (Sunagawa et al, 2016) for one-step production and analysis of KO and KI mice without crossing.
He received awards, including Tokyo Techno Forum 21, Gold Medal (Tokyo Techno Forum 21, 2005), Young Investigator Awards (MEXT, 2006) and IBM Science Award (IBM, 2009), a Young Investigator Promotion Awards (Japanese Society for Chronobiology, 2007). He also received Tsukahara Award (Brain Science Foundation, 2012), Japan Innovator Awards (Nikkei Business Publications Inc. 2004), Yamazaki-Teiichi Prize (Foundation for Promotion of Material Science and Technology of Japan, 2015), Innovator of the Year (2017) and The Ichimura Prize in Science for Excellent Achievement (Ichimura Foundation for New Technology, 2018).
Career
■ Career
- 2011 - 2018
Japan Science and Technology Agency, 「細胞機能の構成的な理解と制御」, 研究領域総括 - 2011 - 2018
理化学研究所 生命システム研究センター, 細胞デザインコア/合成生物学研究グループ, コア長/グループディレクター - 2018
理化学研究所 生命機能科学研究センター, 合成生物学研究チーム, チームリーダー - 2017
東京大学国際高等研究所ニューロインテリジェンス国際研究機構, 主任研究員(兼担) - 2016
東京大学大学院情報理工学研究科システム情報学専攻, 教授(兼担) - 2009 - 2014
理化学研究所 発生・再生科学総合研究センター, システムバイオロジー研究プロジェクト, プロジェクトリーダー - 2012 - 2013
東京大学大学院, 医学系研究科, 客員教授 (兼任) - 2010 - 2013
National Institute of Genetics, 客員教授 - 2009 - 2013
Kyoto University, 理学研究科(数学), 併任教授 - 2004 - 2013
理化学研究所 発生・再生科学総合研究センター, 機能ゲノミクスサブユニット, ユニットリーダー(兼任) - 2013
The University of Tokyo, Graduate School of Medicine, Functional Biology, 教授 - 2011
Osaka University, 生命機能研究科, 連携大学院(招聘教授) - 2003 - 2010
理化学研究所 発生・再生科学総合研究センター, システムバイオロジー研究チーム, チームリーダー - 2008 - 2009
理化学研究所, 研究員 - 2005 - 2006
Tohoku University, Institute of Development, Aging and Cancer, 客員教授 (兼任) - 2006
Osaka University, 理学研究科(生物), 連携大学院(招聘教授) - 2005
The University of Tokushima, ゲノム機能研究センター, 客員教授 (兼任) - 2001 - 2002
山之内製薬株式会社, 研究員(グループリーダー) - 2000 - 2001
山之内製薬株式会社, 研究員(修士卒扱い) - 1999 - 2000
山之内製薬株式会社, 研究アシスタント - 1998 - 2000
ERATO北野プロジェクト, 研究アシスタント - 1997 - 1998
ソニーコンピューターサイエンス研究所, 研究アシスタント
Research activity information
■ Award
- 2018
第50回 市村学術賞功績賞, 市村学術賞功績賞 - 2017
第4回イノベーター・オブ・ザ・イヤー, イノベーター・オブ・ザ・イヤー
Japan
Hiroki Ueda - 2015
第15回山崎貞一賞, 山崎貞一賞
Japan
Hiroki Ueda - 2012
塚原仲晃記念賞, 塚原仲晃記念賞
Japan
Hiroki Ueda - 2011
永瀬賞(フロンティアサロン), 永瀬賞(フロンティアサロン)
Japan
Hiroki Ueda - 2011
Changemakers of the year 2011, Changemakers of the year 2011
Japan
Hiroki Ueda - 2011
日本学術振興会賞, 日本学術振興会賞
Japan
Hiroki Ueda - 2009
第23回日本IBM科学賞, 日本IBM科学賞
Japan
Hiroki Ueda - 2007
第5回日本時間生物学会, 学術奨励賞
Japan
Hiroki Ueda - 2006
Genome Technology, “Tomorrow’s PI”
Hiroki Ueda - 2006
文部科学大臣賞, 若手科学者賞
Japan
Hiroki Ueda - 2005
東京テクノフォーラム21, ゴールドメダル
Japan
Hiroki Ueda - 2004
日本イノベーター大賞, 優秀賞
Japan
Hiroki Ueda - 2002
Sleep Research Society, SRBR Joint Meeting Travel Award
Hiroki Ueda - 2001
ショウジョウバエ研究会, 森脇大五郎 あたますっきり賞
Japan
Hiroki Ueda
- Chemical Landscape for Tissue Clearing based on Hydrophilic Reagents
Kazuki Tainaka; Tatsuya C. Murakam; Etsuo A. Susaki; Chika Shimizu; Rie Saito; Kei Takahashi; Akiko Hayashi-Takagi; Hiroshi Sekiya; Yasunobu Arima; Satoshi Nojima; Masako Ikemura; Tetsuo Ushiku; Yoshihiro Shimizu; Masaaki Murakami; Kenji F. Tanaka; Masamitsu Iino; Haruo Kasai; Toshikuni Sasaoka; Kazuto Kobayashi; Kohei Miyazono; Eiichi Morii; Tadashi Isa; Masashi Fukayama; Akiyoshi Kakita; Hiroki R. Ueda
Cell Reports, 24 Aug. 2108, [Reviewed] - Whole-Brain Single-Neuron Atlas Reveals Microglial Security Hole Accelerating Neuronal Vulnerability
Hiroki Ueda; Tomoki Mitani; Kosei Yamaura; Rikuhiro Yamada; Katsuhiko Matsumoto; Etsuo Susaki; Naruhiko Sahara; Rin Yanai; Kensuke Ikenaka; Shiying Jiang; Hideki Hayakawa; Hideki Mochizuki; Kousuke Baba
11 Feb. 2025 - DECODE enables high-throughput mapping of antibody epitopes at single amino acid resolution.
Katsuhiko Matsumoto; Shoko Y Harada; Shota Y Yoshida; Ryohei Narumi; Tomoki T Mitani; Saori Yada; Aya Sato; Eiichi Morii; Yoshihiro Shimizu; Hiroki R Ueda
PLoS biology, Jan. 2025 - 睡眠健診の実現にむけて 子ども睡眠健診プロジェクトの現状
南 陽一; 岸 哲史; 上田 泰己
睡眠と環境, Dec. 2024 - Whole‐brain Cellome‐Wide Association Study (CWAS) Unveils Ultra‐Early Neurodegeneration Phenomena in a 3D Spatial Cell Atlas
Tomoki T Mitani; Kosei Yamaura; Katsuhiko Matsumoto; Rikuhiro Yamada; Etsuo A Susaki; Hiroki R Ueda
Alzheimer's & Dementia, Dec. 2024 - A novel tauopathy model mimicking molecular and spatial aspects of human tau pathology
Rin Yanai; Tomoki T Mitani; Etsuo A Susaki; Takeharu Minamihisamatsu; Masafumi Shimojo; Yuri Saito; Hiroshi Mizuma; Nobuhiro Nitta; Daita Kaneda; Yoshio Hashizume; Gen Matsumoto; Kentaro Tanemura; Ming-Rong Zhang; Makoto Higuchi; Hiroki R Ueda; Naruhiko Sahara
Brain Communications, 19 Sep. 2024 - An automated sleep staging tool based on simple statistical features of mice electroencephalography (EEG) and electromyography (EMG) data
Rikuhiro G. Yamada; Kyoko Matsuzawa; Koji L. Ode; Hiroki R. Ueda
European Journal of Neuroscience, 28 Jul. 2024 - Genome-wide epitope identification with single-amino-acid resolution via high-throughput and unbiased peptide analysis
Katsuhiko Matsumoto; Shoko Y. Harada; Shota Y. Yoshida; Ryohei Narumi; Tomoki T. Mitani; Saori Yada; Aya Sato; Eiichi Morii; Yoshihiro Shimizu; Hiroki R. Ueda
15 Jun. 2024 - Realization of cellomics to dive into the whole-body or whole-organ cell cloud.
Tomoki T Mitani; Etsuo A Susaki; Katsuhiko Matsumoto; Hiroki R Ueda
Nature methods, 13 Jun. 2024 - 眠りの多様性から拓く未来社会 睡眠・覚醒リズムをモデルとするヒトシステム生物学の確立に向けた試み(Future society opened up through the diversity of sleep Toward the establishment of human systems biology using sleep-wake rhythm as a model.)
Minami Yoichi; Kishi Akifumi; Ueda Hiroki
The Journal of Physiological Sciences, May 2024 - Bioorthogonal chemical labeling of endogenous neurotransmitter receptors in living mouse brains.
Hiroshi Nonaka; Seiji Sakamoto; Kazuki Shiraiwa; Mamoru Ishikawa; Tomonori Tamura; Kyohei Okuno; Takumi Kondo; Shigeki Kiyonaka; Etsuo A Susaki; Chika Shimizu; Hiroki R Ueda; Wataru Kakegawa; Itaru Arai; Michisuke Yuzaki; Itaru Hamachi
Proceedings of the National Academy of Sciences of the United States of America, 06 Feb. 2024 - Post-synaptic competition between calcineurin and PKA regulates mammalian sleep-wake cycles
Yimeng Wang; Siyu Cao; Daisuke Tone; Hiroshi Fujishima; Rikuhiro G. Yamada; Rei-ichiro Ohno; Shoi Shi; Kyoko Matsuzawa; Mari Kaneko; Maki Ukai-Tadenuma; Hideki Ukai; Carina Hanashima; Hiroshi Kiyonari; Kenta Sumiyama; Koji L. Ode; Hiroki R. Ueda
22 Dec. 2023 - 小児の睡眠教育2023 ウェアラブルデバイスを用いた睡眠教育
南 陽一; 岸 哲史; 上田 泰己
日本公衆衛生学会総会抄録集, Oct. 2023 - WHOLE-BRAIN CELLOME-WIDE ASSOCIATION STUDY (CWAS) UNVEILS NEURODEGENERATIVE TRAJECTORIES IN A 3D CELLULAR LANDSCAPE
Tomoki Mitani; Katsuhiko Matsumoto; Hiroki Ueda
IBRO Neuroscience Reports, Oct. 2023 - Circadian ribosome profiling reveals a role for the Period2 upstream open reading frame in sleep
Arthur Millius; Rikuhiro G. Yamada; Hiroshi Fujishima; Kazuhiko Maeda; Daron M. Standley; Kenta Sumiyama; Dimitri Perrin; Hiroki R. Ueda
Proceedings of the National Academy of Sciences, 28 Sep. 2023, [Reviewed]
Last - 日本の子どもの睡眠の現状と改善策・啓発活動における課題 「子ども睡眠健診」プロジェクトで見えてきた実態
岸 哲史; 南 陽一; 上田 泰己
日本睡眠学会定期学術集会・日本時間生物学会学術大会合同大会プログラム・抄録集, Sep. 2023 - Correction to: Elucidation of the mechanism of amyloid A and transthyretin formation using mass spectrometry-based absolute quantification.
Yukako Shintani-Domoto; Koji L Ode; Seitaro Nomura; Hiroyuki Abe; Hiroki R Ueda; Takashi Sakatani; Ryuji Ohashi
Virchows Archiv : an international journal of pathology, 11 Aug. 2023 - Elucidation of the mechanism of amyloid A and transthyretin formation using mass spectrometry-based absolute quantification.
Yukako Shintani-Domoto; Koji L Ode; Seitaro Nomura; Hiroyuki Abe; Hiroki R Ueda; Takashi Sakatani; Ryuji Ohashi
Virchows Archiv : an international journal of pathology, 15 Jul. 2023 - Cortical parvalbumin neurons are responsible for homeostatic sleep rebound through CaMKII activation
Kazuhiro Kon; Koji L. Ode; Tomoyuki Mano; Hiroshi Fujishima; Daisuke Tone; Chika Shimizu; Shinnosuke Shiono; Saori Yada; Junko Yoshida Garçon; Mari Kaneko; Yuta Shinohara; Riina R. Takahashi; Rikuhiro G. Yamada; Shoi Shi; Kenta Sumiyama; Hiroshi Kiyonari; Etsuo A. Susaki; Hiroki R. Ueda
29 Apr. 2023 - CCPG1 recognizes ER luminal proteins for selective ER-phagy
Shunsuke Ishii; Haruka Chino; Koji L. Ode; Yoshitaka Kurikawa; Hiroki R. Ueda; Akira Matsuura; Noboru Mizushima; Eisuke Itakura
Molecular Biology of the Cell, 07 Mar. 2023, [Reviewed] - A growing understanding of the role of muscarinic receptors in the molecular pathology and treatment of schizophrenia.
Brian Dean; Geor Bakker; Hiroki R Ueda; Andrew B Tobin; Alastair Brown; Richard A A Kanaan
Frontiers in cellular neuroscience, 2023 - The role of calcium and CaMKII in sleep
Yuyang Wang; Yoichi Minami; Koji L. Ode; Hiroki R. Ueda
Frontiers in Systems Neuroscience, 22 Dec. 2022 - Distinct phosphorylation states of mammalian CaMKIIβ control the induction and maintenance of sleep
Daisuke Tone; Koji L. Ode; Qianhui Zhang; Hiroshi Fujishima; Rikuhiro G. Yamada; Yoshiki Nagashima; Katsuhiko Matsumoto; Zhiqing Wen; Shota Y. Yoshida; Tomoki T. Mitani; Yuki Arisato; Rei-ichiro Ohno; Maki Ukai-Tadenuma; Junko Yoshida Garçon; Mari Kaneko; Shoi Shi; Hideki Ukai; Kazunari Miyamichi; Takashi Okada; Kenta Sumiyama; Hiroshi Kiyonari; Hiroki R. Ueda
PLOS Biology, 04 Oct. 2022 - An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis.
Kei Takahashi; Ko Abe; Shimpei I Kubota; Noriaki Fukatsu; Yasuyuki Morishita; Yasuhiro Yoshimatsu; Satoshi Hirakawa; Yoshiaki Kubota; Tetsuro Watabe; Shogo Ehata; Hiroki R Ueda; Teppei Shimamura; Kohei Miyazono
Nature communications, 12 Sep. 2022 - Circadian ribosome profiling reveals a role for the Period2 upstream opening reading frame in sleep
Arthur Millius; Rikuhiro Yamada; Hiroshi Fujishima; Kazuhiko Maeda; Daron M. Standley; Kenta Sumiyama; Dimitri Perrin; Hiroki R. Ueda
11 Aug. 2022 - Ubiquitination of phosphatidylethanolamine in organellar membranes
Jun-ichi Sakamaki; Koji L. Ode; Yoshitaka Kurikawa; Hiroki R. Ueda; Hayashi Yamamoto; Noboru Mizushima
Molecular Cell, Aug. 2022 - A novel three-dimensional imaging system based on polysaccharide staining for accurate histopathological diagnosis of inflammatory bowel diseases.
Satoshi Nojima; Shoichi Ishida; Kei Terayama; Katsuhiko Matsumoto; Takahiro Matsui; Shinichiro Tahara; Kenji Ohshima; Hiroki Kiyokawa; Kansuke Kido; Koto Ukon; Shota Y Yoshida; Tomoki T Mitani; Yuichiro Doki; Tsunekazu Mizushima; Yasushi Okuno; Etsuo A Susaki; Hiroki R Ueda; Eiichi Morii
Cellular and molecular gastroenterology and hepatology, 11 Jul. 2022 - 小児における睡眠障害・睡眠呼吸障害update 2022 睡眠健診の実現に向けた大規模ヒト睡眠計測の試み
南 陽一; 上田 泰己
日本睡眠学会定期学術集会プログラム・抄録集, Jun. 2022 - A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues.
Adam K Glaser; Kevin W Bishop; Lindsey A Barner; Etsuo A Susaki; Shimpei I Kubota; Gan Gao; Robert B Serafin; Pooja Balaram; Emily Turschak; Philip R Nicovich; Hoyin Lai; Luciano A G Lucas; Yating Yi; Eva K Nichols; Hongyi Huang; Nicholas P Reder; Jasmine J Wilson; Ramya Sivakumar; Elya Shamskhou; Caleb R Stoltzfus; Xing Wei; Andrew K Hempton; Marko Pende; Prayag Murawala; Hans-Ulrich Dodt; Takato Imaizumi; Jay Shendure; Brian J Beliveau; Michael Y Gerner; Li Xin; Hu Zhao; Lawrence D True; R Clay Reid; Jayaram Chandrashekar; Hiroki R Ueda; Karel Svoboda; Jonathan T C Liu
Nature methods, 11 May 2022, [Reviewed] - Phosphorylation by casein kinase 2 enhances the interaction between ER‐phagy receptor TEX264 and ATG8 proteins
Haruka Chino; Akinori Yamasaki; Koji L Ode; Hiroki R Ueda; Nobuo N Noda; Noboru Mizushima
EMBO reports, 13 Apr. 2022 - The 103,200-arm acceleration dataset in the UK Biobank revealed a landscape of human sleep phenotypes
Machiko Katori; Shoi Shi; Koji L. Ode; Yasuhiro Tomita; Hiroki R. Ueda
Proceedings of the National Academy of Sciences, 22 Mar. 2022, [Reviewed]
Last - A design principle of spindle oscillations in mammalian sleep.
Tetsuya Yamada; Shoi Shi; Hiroki R Ueda
iScience, 18 Mar. 2022, [Reviewed] - Phosphorylation by casein kinase 2 ensures ER-phagy receptor TEX264 binding to ATG8 proteins
Haruka Chino; Akinori Yamasaki; Koji L Ode; Hiroki R Ueda; Nobuo N Noda; Noboru Mizushima
11 Feb. 2022 - High-throughput Genetically Modified Animal Experiments Achieved by Next-generation Mammalian Genetics.
Yoichi Minami; Yufei Yuan; Hiroki R Ueda
Journal of biological rhythms, 09 Feb. 2022 - A jerk-based algorithm ACCEL for the accurate classification of sleep–wake states from arm acceleration
Koji L. Ode; Shoi Shi; Machiko Katori; Kentaro Mitsui; Shin Takanashi; Ryo Oguchi; Daisuke Aoki; Hiroki R. Ueda
iScience, Feb. 2022, [Reviewed] - Identification of a novel sleep-regulating factor by in vivo screening of neurodegenerative disease-related factors
Yamaura Kosei; Tone Daisuke; Yamada Rikuhiro; Ueda Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - Analysis of a novel gene involved in the maintenance of wakefulness in mammals
Yimeng Wang; Yamada Rikuhiro; Tone Daisuke; Ueda Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - In vivo molecular analysis of a novel gene involved in the maintenance of wakefulness
Yimeng Wang; Tone Daisuke; Yamada Rikuhiro; Ueda R.Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - Analysis of protein dephosphorylation underlying mammalian sleep-wake regulation
Cao Siyu; Tone Daisuke; Yamada Rikuhiro; Ueda Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - Multistep regulation of mammalian sleep by phosphorylation states of CaMKII
Tone Daisuke; Ode Koji; Zhang Qianhui; Ueda Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - Characterization of multiple phosphorylation states of CaMKIIβ in mammalian sleep regulation
Siying Li; Tone Daisuke; Ode Koji; Ueda Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - Identification of Ryanodine receptor 1-selective agonists
Kanaya Hiroyuki; Ken Kuwajima; Koji Ode; Hiroki Ueda
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - Investigation of dephosphorylation of synaptic phosphoproteins engaged in mammalian sleep-wake regulation
Siyu Cao; Tone Daisuke; Yamada Rikuhiro; Sumiyama Kenta; Ueda Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2022 - Next-Generation Mice Genetics for Circadian Studies
Hideki Ukai; Koji L. Ode; Hiroki R. Ueda
Circadian Clocks, 2022 - Tissue clearing
Richardson DS; Guan W; Matsumoto K; Pan C; Chung K; Ertürk A; Ueda HR; Lichtman JW
Nature Review Methods Primers, Dec. 2021 - Towards organism-level systems biology by next-generation genetics and whole-organ cell profiling.
Yoichi Minami; Yufei Yuan; Hiroki R Ueda
Biophysical reviews, Dec. 2021 - NEK9 regulates primary cilia formation by acting as a selective autophagy adaptor for MYH9/myosin IIA
Yasuhiro Yamamoto; Haruka Chino; Satoshi Tsukamoto; Koji L. Ode; Hiroki R. Ueda; Noboru Mizushima
Nature Communications, Dec. 2021 - The circadian clock ticks in organoids
Rikuhiro G Yamada; Hiroki R Ueda
The EMBO Journal, 22 Nov. 2021 - Realization of phosphorylation hypothesis of sleep by mammalian CaMKIIβ
Daisuke Tone; Koji L. Ode; Qianhui Zhang; Hiroshi Fujishima; Rikuhiro G. Yamada; Yoshiki Nagashima; Katsuhiko Matsumoto; Zhiqing Wen; Shota Y. Yoshida; Tomoki T. Mitani; Rei-ichiro Ohno; Maki Ukai-Tadenuma; Junko Yoshida Garçon; Mari Kaneko; Shoi Shi; Hideki Ukai; Kazunari Miyamichi; Takashi Okada; Kenta Sumiyama; Hiroshi Kiyonari; Hiroki R. Ueda
13 Oct. 2021 - Faculty Opinions recommendation of Anti-NMDAR encephalitis induced in mice by active immunization with a peptide from the amino-terminal domain of the GluN1 subunit.
Hiroki Ueda; Koji L Ode; Saori Yada
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature, 20 Sep. 2021 - Mechanical load regulates bone growth via periosteal Osteocrin.
Haruko Watanabe-Takano; Hiroki Ochi; Ayano Chiba; Ayaka Matsuo; Yugo Kanai; Shigetomo Fukuhara; Naoki Ito; Keisuke Sako; Takahiro Miyazaki; Kazuki Tainaka; Ichiro Harada; Shingo Sato; Yasuhiro Sawada; Naoto Minamino; Shu Takeda; Hiroki R Ueda; Akihiro Yasoda; Naoki Mochizuki
Cell reports, 13 Jul. 2021 - Visualization of the cancer cell cycle by tissue-clearing technology using the Fucci reporter system.
Kei Takahashi; Ryo Tanabe; Shogo Ehata; Shimpei I Kubota; Yasuyuki Morishita; Hiroki R Ueda; Kohei Miyazono
Cancer science, 19 Jun. 2021 - 量子ドットによる間葉系幹細胞由来エクソソームの透明化組織内イメージング
浦野 大智; 湯川 博; 西村 勇姿; 洲崎 悦生; 上田 泰己; 馬場 嘉信
日本DDS学会学術集会プログラム予稿集, Jun. 2021 - 量子ドットによる間葉系幹細胞由来エクソソームの透明化組織内イメージング
浦野 大智; 湯川 博; 西村 勇姿; 洲崎 悦生; 上田 泰己; 馬場 嘉信
日本DDS学会学術集会プログラム予稿集, Jun. 2021 - CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping
Tomoyuki Mano; Ken Murata; Kazuhiro Kon; Chika Shimizu; Hiroaki Ono; Shoi Shi; Rikuhiro G. Yamada; Kazunari Miyamichi; Etsuo A. Susaki; Kazushige Touhara; Hiroki R. Ueda
Cell Reports Methods, Jun. 2021, [Reviewed]
Last - 量子ドットによる間葉系幹細胞由来エクソソームの透明化組織内イメージング
浦野 大智; 湯川 博; 西村 勇姿; 洲崎 悦生; 上田 泰己; 馬場 嘉信
JSMI Report, May 2021 - 量子ドットによる間葉系幹細胞由来エクソソームの透明化組織内イメージング
浦野 大智; 湯川 博; 西村 勇姿; 洲崎 悦生; 上田 泰己; 馬場 嘉信
JSMI Report, May 2021 - Activation of Sympathetic Signaling in Macrophages Blocks Systemic Inflammation and Protects against Renal Ischemia-Reperfusion Injury
Sho Hasegawa; Tsuyoshi Inoue; Yasuna Nakamura; Daichi Fukaya; Rie Uni; Chia-Hsien Wu; Rie Fujii; Wachirasek Peerapanyasut; Akashi Taguchi; Takahide Kohro; Shintaro Yamada; Mikako Katagiri; Toshiyuki Ko; Seitaro Nomura; Atsuko Nakanishi Ozeki; Etsuo A. Susaki; Hiroki R. Ueda; Nobuyoshi Akimitsu; Youichiro Wada; Issei Komuro; Masaomi Nangaku; Reiko Inagi
Journal of the American Society of Nephrology, 19 Apr. 2021 - Whole-organ analysis of TGF-β-mediated remodelling of the tumour microenvironment by tissue clearing.
Shimpei I Kubota; Kei Takahashi; Tomoyuki Mano; Katsuhiko Matsumoto; Takahiro Katsumata; Shoi Shi; Kazuki Tainaka; Hiroki R Ueda; Shogo Ehata; Kohei Miyazono
Communications biology, 05 Mar. 2021 - Malignant subclone drives metastasis of genetically and phenotypically heterogenous cell clusters through fibrotic niche generation.
Sau Yee Kok; Hiroko Oshima; Kei Takahashi; Mizuho Nakayama; Kazuhiro Murakami; Hiroki R Ueda; Kohei Miyazono; Masanobu Oshima
Nature communications, 08 Feb. 2021 - A design principle for posttranslational chaotic oscillators
Hiroto Q. Yamaguchi; Koji L. Ode; Hiroki R. Ueda
iScience, Jan. 2021, [Reviewed]
Last - 腎臓を視る 組織透明化による腎臓病の3次元病態解析
長谷川 頌; 洲崎 悦生; 上田 泰己; 南学 正臣
生化学, Dec. 2020 - Generation of gene-corrected iPSCs line (KEIUi001-A) from a PARK8 patient iPSCs with familial Parkinson’s disease carrying the I2020T mutation in LRRK2
Etsuro Ohta; Takefumi Sone; Hideki Ukai; Tomoko Hisamatsu; Tokiko Kitagawa; Mitsuru Ishikawa; Makiko Nagai; Hiroki R. Ueda; Fumiya Obata; Hideyuki Okano
Stem Cell Research, Dec. 2020 - Rapid and easy-to-use ES cell manipulation device with a small groove near culturing wells
Shun-ichi Funano; Daisuke Tone; Hideki Ukai; Hiroki R. Ueda; Yo Tanaka
BMC Research Notes, Dec. 2020 - Protocol for Imaging and Analysis of Mouse Tumor Models with CUBIC Tissue Clearing
Kei Takahashi; Shimpei I. Kubota; Shogo Ehata; Hiroki R. Ueda; Kohei Miyazono
STAR Protocols, Dec. 2020, [Reviewed] - Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16high Cells In Vivo
Satotaka Omori; Teh-Wei Wang; Yoshikazu Johmura; Tomomi Kanai; Yasuhiro Nakano; Taketomo Kido; Etsuo A. Susaki; Takuya Nakajima; Shigeyuki Shichino; Satoshi Ueha; Manabu Ozawa; Kisho Yokote; Soichiro Kumamoto; Atsuya Nishiyama; Takeharu Sakamoto; Kiyoshi Yamaguchi; Seira Hatakeyama; Eigo Shimizu; Kotoe Katayama; Yasuhiro Yamada; Satoshi Yamazaki; Kanako Iwasaki; Chika Miyoshi; Hiromasa Funato; Masashi Yanagisawa; Hiroo Ueno; Seiya Imoto; Yoichi Furukawa; Nobuaki Yoshida; Kouji Matsushima; Hiroki R. Ueda; Atsushi Miyajima; Makoto Nakanishi
Cell Metabolism, Nov. 2020, [Reviewed] - Reflections on the past two decades of neuroscience
Danielle S. Bassett; Kathleen E. Cullen; Simon B. Eickhoff; Martha J. Farah; Yukiko Goda; Patrick Haggard; Hailan Hu; Yasmin L. Hurd; Sheena A. Josselyn; Baljit S. Khakh; Jürgen A. Knoblich; Panayiota Poirazi; Russell A. Poldrack; Marco Prinz; Pieter R. Roelfsema; Tara L. Spires-Jones; Mriganka Sur; Hiroki R. Ueda
Nature Reviews Neuroscience, Oct. 2020, [Reviewed]
Last - The cellular model of albumin endocytosis uncovers link between membrane and nuclear proteins.
Seiya Urae; Yutaka Harita; Tomohiro Udagawa; Koji L Ode; Masami Nagahama; Yuko Kajiho; Shoichiro Kanda; Akihiko Saito; Hiroki R Ueda; Masaomi Nangaku; Akira Oka
Journal of cell science, 01 Jun. 2020, [Reviewed] - Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy.
Hiroki R Ueda; Hans-Ulrich Dodt; Pavel Osten; Michael N Economo; Jayaram Chandrashekar; Philipp J Keller
Neuron, 06 May 2020, [Reviewed] - Publisher Correction: Tissue clearing and its applications in neuroscience.
Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Nature reviews. Neuroscience, May 2020, [Reviewed] - The oral hypoxia-inducible factor prolyl hydroxylase inhibitor enarodustat counteracts alterations in renal energy metabolism in the early stages of diabetic kidney disease.
Sho Hasegawa; Tetsuhiro Tanaka; Tomoyuki Saito; Kenji Fukui; Takeshi Wakashima; Etsuo A Susaki; Hiroki R Ueda; Masaomi Nangaku
Kidney international, May 2020, [Reviewed] - Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues.
Etsuo A Susaki; Chika Shimizu; Akihiro Kuno; Kazuki Tainaka; Xiang Li; Kengo Nishi; Ken Morishima; Hiroaki Ono; Koji L Ode; Yuki Saeki; Kazunari Miyamichi; Kaoru Isa; Chihiro Yokoyama; Hiroki Kitaura; Masako Ikemura; Tetsuo Ushiku; Yoshihiro Shimizu; Takashi Saito; Takaomi C Saido; Masashi Fukayama; Hirotaka Onoe; Kazushige Touhara; Tadashi Isa; Akiyoshi Kakita; Mitsuhiro Shibayama; Hiroki R Ueda
Nature communications, 27 Apr. 2020, [Reviewed]
Last - 左室補助人工心臓装着前後における心筋蛋白質のプロテオミクス
堂本 裕加子; 大出 晃士; 永島 良樹; 木下 修; 野村 征太郎; 阿部 浩幸; 小野 稔; 上田 泰己; 牛久 哲男; 深山 正久
日本病理学会会誌, Mar. 2020 - Visualization and molecular characterization of whole-brain vascular networks with capillary resolution.
Takeyuki Miyawaki; Shota Morikawa; Etsuo A Susaki; Ai Nakashima; Haruki Takeuchi; Shun Yamaguchi; Hiroki R Ueda; Yuji Ikegaya
Nature communications, 27 Feb. 2020, [Reviewed] - Tissue clearing and its applications in neuroscience.
Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Nature reviews. Neuroscience, Feb. 2020, [Reviewed] - Mass spectrometry-based absolute quantification of amyloid proteins in pathology tissue specimens: Merits and limitations.
Makiko Ogawa; Yukako Shintani-Domoto; Yoshiki Nagashima; Koji L Ode; Aya Sato; Yoshihiro Shimizu; Kenichi Ohashi; Michael H A Roehrl; Tetsuo Ushiku; Hiroki R Ueda; Masashi Fukayama
PloS one, 2020, [Reviewed] - Advanced CUBIC tissue clearing for whole-organ cell profiling.
Katsuhiko Matsumoto; Tomoki T Mitani; Shuhei A Horiguchi; Junichi Kaneshiro; Tatsuya C Murakami; Tomoyuki Mano; Hiroshi Fujishima; Ayumu Konno; Tomonobu M Watanabe; Hirokazu Hirai; Hiroki R Ueda
Nature protocols, Dec. 2019, [Reviewed] - SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery
Shion Honda; Shoi Shi; Hiroki R. Ueda
CoRR, Nov. 2019 - Novel 3D analysis using optical tissue clearing documents the evolution of murine rapidly progressive glomerulonephritis.
Victor G Puelles; David Fleck; Lena Ortz; Stella Papadouri; Thiago Strieder; Alexander M C Böhner; James W van der Wolde; Michael Vogt; Turgay Saritas; Christoph Kuppe; Astrid Fuss; Sylvia Menzel; Barbara M Klinkhammer; Gerhard Müller-Newen; Felix Heymann; Leon Decker; Fabian Braun; Oliver Kretz; Tobias B Huber; Etsuo A Susaki; Hiroki R Ueda; Peter Boor; Jürgen Floege; Rafael Kramann; Christian Kurts; John F Bertram; Marc Spehr; David J Nikolic-Paterson; Marcus J Moeller
Kidney international, Aug. 2019, [Reviewed] - Next-generation human genetics for organism-level systems biology.
Hideki Ukai; Kenta Sumiyama; Hiroki R Ueda
Current opinion in biotechnology, Aug. 2019, [Reviewed] - Comprehensive three-dimensional analysis (CUBIC-kidney) visualizes abnormal renal sympathetic nerves after ischemia/reperfusion injury.
Sho Hasegawa; Etsuo A Susaki; Tetsuhiro Tanaka; Hirotaka Komaba; Takehiko Wada; Masafumi Fukagawa; Hiroki R Ueda; Masaomi Nangaku
Kidney international, Jul. 2019, [Reviewed] - 絶対定量的質量分析法を用いたアミロイドーシス30症例の検討
堂本 裕加子; 小川 真喜子; 永島 良樹; 大出 晃士; 清水 義宏; 上田 泰己; 深山 正久
日本病理学会会誌, Apr. 2019 - Genes and Ion Channels in the Circadian and Homeostatic Regulation of Sleep
Shoi Shi; Arthur Millius; Hiroki R. Ueda
Handbook of Sleep Research, 2019, [Reviewed], [Invited] - The discovery of novel gene for stabilizing wakefulness
Ono Hiroaki; Yamada Rikuhiro; Shi Shoi; Ukai-Tadenuma Maki; Fujishima Hiroshi; Ukai Hideki; Ohno Rei-ichiro; Tone Daisuke; Kanda Genki; Kon Kazuhiro; Ueda Hiroki
Proceedings for Annual Meeting of The Japanese Pharmacological Society, 2019 - Molecular Mechanisms of REM Sleep.
Rikuhiro G Yamada; Hiroki R Ueda
Frontiers in neuroscience, 2019, [Reviewed] - A Microfluidic Platform Based on Robust Gas and Liquid Exchange for Long-term Culturing of Explanted Tissues.
Nobutoshi Ota; Genki N Kanda; Hiroyuki Moriguchi; Yusufu Aishan; Yigang Shen; Rikuhiro G Yamada; Hiroki R Ueda; Yo Tanaka
Analytical sciences : the international journal of the Japan Society for Analytical Chemistry, 2019, [Reviewed] - A period without PER: understanding 24-hour rhythms without classic transcription and translation feedback loops.
Arthur Millius; Koji L Ode; Hiroki R Ueda
F1000Research, 2019, [Reviewed] - The Flow of Time Inside the Cell: The Time of Days Given by Molecules Driving the Circadian Clocks
Koji L. Ode; Hiroki R. Ueda
Minorities and Small Numbers from Molecules to Organisms in Biology: Toward a New Understanding of Biological Phenomena, 03 Nov. 2018 - Leak potassium channels regulate sleep duration.
Kensuke Yoshida; Shoi Shi; Maki Ukai-Tadenuma; Hiroshi Fujishima; Rei-Ichiro Ohno; Hiroki R Ueda
Proceedings of the National Academy of Sciences of the United States of America, 02 Oct. 2018, [Reviewed] - Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.
Mano T; Albanese A; Dodt HU; Erturk A; Gradinaru V; Treweek JB; Miyawaki A; Chung K; Ueda HR
The Journal of neuroscience : the official journal of the Society for Neuroscience, Oct. 2018, [Reviewed] - Easy and efficient production of completely embryonic-stem-cell-derived mice using a micro-aggregation device.
Sumiyama K; Matsumoto N; Garçon-Yoshida J; Ukai H; Ueda HR; Tanaka Y
PloS one, Sep. 2018, [Reviewed] - Lost in clocks: non-canonical circadian oscillation discovered in Drosophila cells.
Ode KL; Ueda HR
Molecular systems biology, Sep. 2018, [Reviewed] - Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep.
Yasutaka Niwa; Genki N Kanda; Rikuhiro G Yamada; Shoi Shi; Genshiro A Sunagawa; Maki Ukai-Tadenuma; Hiroshi Fujishima; Naomi Matsumoto; Koh-Hei Masumoto; Mamoru Nagano; Takeya Kasukawa; James Galloway; Dimitri Perrin; Yasufumi Shigeyoshi; Hideki Ukai; Hiroshi Kiyonari; Kenta Sumiyama; Hiroki R Ueda
Cell reports, 28 Aug. 2018, [Reviewed] - Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.
Kazuki Tainaka; Tatsuya C Murakami; Etsuo A Susaki; Chika Shimizu; Rie Saito; Kei Takahashi; Akiko Hayashi-Takagi; Hiroshi Sekiya; Yasunobu Arima; Satoshi Nojima; Masako Ikemura; Tetsuo Ushiku; Yoshihiro Shimizu; Masaaki Murakami; Kenji F Tanaka; Masamitsu Iino; Haruo Kasai; Toshikuni Sasaoka; Kazuto Kobayashi; Kohei Miyazono; Eiichi Morii; Tadashi Isa; Masashi Fukayama; Akiyoshi Kakita; Hiroki R Ueda
Cell reports, 21 Aug. 2018, [Reviewed] - Design Principles of Phosphorylation-Dependent Timekeeping in Eukaryotic Circadian Clocks.
Ode KL; Ueda HR
Cold Spring Harbor perspectives in biology, Aug. 2018, [Reviewed] - Cell-free synthesis of stable isotope-labeled internal standards for targeted quantitative proteomics
Ryohei Narumi; Keiko Masuda; Takeshi Tomonaga; Jun Adachi; Hiroki R. Ueda; Yoshihiro Shimizu
Synthetic and Systems Biotechnology, 01 Jun. 2018, [Reviewed] - A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing
Tatsuya C. Murakami; Tomoyuki Mano; Shu Saikawa; Shuhei A. Horiguchi; Daichi Shigeta; Kousuke Baba; Hiroshi Sekiya; Yoshihiro Shimizu; Kenji F. Tanaka; Hiroshi Kiyonari; Masamitsu Iino; Hideki Mochizuki; Kazuki Tainaka; Hiroki R. Ueda
Nature Neuroscience, 01 Apr. 2018, [Reviewed] - Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.
Tomohiro Udagawa; Yutaka Harita; Kenichiro Miura; Jun Mitsui; Koji L Ode; Shinichi Morishita; Seiya Urae; Shoichiro Kanda; Yuko Kajiho; Haruko Tsurumi; Hiroki R Ueda; Shoji Tsuji; Akihiko Saito; Akira Oka
Scientific reports, 05 Feb. 2018, [Reviewed] - Ca2+ -Dependent Hyperpolarization Pathways in Sleep Homeostasis and Mental Disorders.
Shoi Shi; Hiroki R Ueda
BioEssays : news and reviews in molecular, cellular and developmental biology, Jan. 2018, [Reviewed] - Comparison of the 3-D patterns of the parasympathetic nervous system in the lung at late developmental stages between mouse and chicken
Tadayoshi Watanabe; Ryo Nakamura; Yuta Takase; Etsuo A. Susaki; Hiroki R. Ueda; Ryosuke Tadokoro; Yoshiko Takahashi
Developmental Biology, 2018, [Reviewed] - Production of knock-in mice in a single generation from embryonic stem cells
Hideki Ukai; Hiroshi Kiyonari; Hiroki R. Ueda
NATURE PROTOCOLS, Dec. 2017, [Reviewed] - Neuronal signals regulate obesity induced beta-cell proliferation by FoxM1 dependent mechanism
Junpei Yamamoto; Junta Imai; Tomohito Izumi; Hironori Takahashi; Yohei Kawana; Kei Takahashi; Shinjiro Kodama; Keizo Kaneko; Junhong Gao; Kenji Uno; Shojiro Sawada; Tomoichiro Asano; Vladimir V. Kalinichenko; Etsuo A. Susaki; Makoto Kanzaki; Hiroki R. Ueda; Yasushi Ishigaki; Tetsuya Yamada; Hideki Katagiri
NATURE COMMUNICATIONS, Dec. 2017, [Reviewed] - Guidelines for Genome-Scale Analysis of Biological Rhythms
Michael E. Hughes; Katherine C. Abruzzi; Ravi Allada; Ron Anafi; Alaaddin Bulak Arpat; Gad Asher; Pierre Baldi; Charissa de Bekker; Deborah Bell-Pedersen; Justin Blau; Steve Brown; M. Fernanda Ceriani; Zheng Chen; Joanna C. Chiu; Juergen Cox; Alexander M. Crowell; Jason P. DeBruyne; Derk-Jan Dijk; Luciano DiTacchio; Francis J. Doyle; Giles E. Duffield; Jay C. Dunlap; Kristin Eckel-Mahan; Karyn A. Esser; Garret A. FitzGerald; Daniel B. Forger; Lauren J. Francey; Ying-Hui Fu; Frederic Gachon; David Gatfield; Paul de Goede; Susan S. Golden; Carla Green; John Harer; Stacey Harmer; Jeff Haspel; Michael H. Hastings; Hanspeter Herzel; Erik D. Herzog; Christy Hoffmann; Christian Hong; Jacob J. Hughey; Jennifer M. Hurley; Horacio O. de la Iglesia; Carl Johnson; Steve A. Kay; Nobuya Koike; Karl Kornacker; Achim Kramer; Katja Lamia; Tanya Leise; Scott A. Lewis; Jiajia Li; Xiaodong Li; Andrew C. Liu; Jennifer J. Loros; Tami A. Martino; Jerome S. Menet; Martha Merrow; Andrew J. Millar; Todd Mockler; Felix Naef; Emi Nagoshi; Michael N. Nitabach; Maria Olmedo; Dmitri A. Nusinow; Louis J. Ptacek; David Rand; Akhilesh B. Reddy; Maria S. Robles; Till Roenneberg; Michael Rosbash; Marc D. Ruben; Samuel S. C. Rund; Aziz Sancar; Paolo Sassone-Corsi; Amita Sehgal; Scott Sherrill-Mix; Debra J. Skene; Kai-Florian Storch; Joseph S. Takahashi; Hiroki R. Ueda; Han Wang; Charles Weitz; Pal O. Westermark; Herman Wijnen; Ying Xu; Gang Wu; Seung-Hee Yoo; Michael Young; Eric Erquan Zhang; Tomasz Zielinski; John B. Hogenesch
JOURNAL OF BIOLOGICAL RHYTHMS, Oct. 2017, [Reviewed] - Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock
Yuta Shinohara; Yohei M. Koyama; Maki Ukai-Tadenuma; Takatsugu Hirokawa; Masaki Kikuchi; Rikuhiro G. Yamada; Hideki Ukai; Hiroshi Fujishima; Takashi Umehara; Kazuki Tainaka; Hiroki R. Ueda
MOLECULAR CELL, Sep. 2017, [Reviewed] - CUBIC pathology: three-dimensional imaging for pathological diagnosis
Satoshi Nojima; Etsuo A. Susaki; Kyotaro Yoshida; Hiroyoshi Takemoto; Naoto Tsujimura; Shohei Iijima; Ko Takachi; Yujiro Nakahara; Shinichiro Tahara; Kenji Ohshima; Masako Kurashige; Yumiko Hori; Naoki Wada; Jun-ichiro Ikeda; Atsushi Kumanogoh; Eiichi Morii; Hiroki R. Ueda
SCIENTIFIC REPORTS, Aug. 2017, [Reviewed] - Whole-Body Profiling of Cancer Metastasis with Single-Cell Resolution
Shimpei I. Kubota; Kei Takahashi; Jun Nishida; Yasuyuki Morishita; Shogo Ehata; Kazuki Tainaka; Kohei Miyazono; Hiroki R. Ueda
CELL REPORTS, Jul. 2017, [Reviewed] - Fast and slow Ca2+-dependent hyperpolarization mechanisms connect membrane potential and sleep homeostasis
Koji L. Ode; Takahiro Katsumata; Daisuke Tone; Hiroki R. Ueda
CURRENT OPINION IN NEUROBIOLOGY, Jun. 2017, [Reviewed] - Ca2+-dependent hyperpolarization hypothesis for mammalian sleep
Fumiya Tatsuki; Koji L. Ode; Hiroki R. Ueda
NEUROSCIENCE RESEARCH, May 2017, [Reviewed] - Compass in the data ocean: Toward chronotherapy
Rikuhiro G. Yamada; Hiroki R. Ueda
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, May 2017, [Reviewed] - A Design Principle for an Autonomous Post-translational Pattern Formation (vol 19, pg 863, 2017)
Shuhei S. Sugai; Koji L. Ode; Hiroki R. Ueda
CELL REPORTS, May 2017, [Reviewed] - A Design Principle for an Autonomous Post-translational Pattern Formation
Shuhei S. Sugai; Koji L. Ode; Hiroki R. Ueda
CELL REPORTS, Apr. 2017, [Reviewed] - Analysis of Ca2+-dependent hyperpolarization pathway during the cortical slow oscillations observed in ex vivo cortical slices
Katsumata Takahiro; Ode Koji; Yagishita Sho; Kasai Ham; Ueda Hiroki
JOURNAL OF PHARMACOLOGICAL SCIENCES, Mar. 2017, [Reviewed] - [Molecular Mechanisms of Circadian Rhythm and Sleep Homeostasis].
Kon K; Ode KL; Ueda HR
Brain and nerve = Shinkei kenkyu no shinpo, Mar. 2017, [Reviewed] - Systems Biology-Derived Discoveries of intrinsic Clocks
Arthur Millius; Hiroki R. Ueda
FRONTIERS IN NEUROLOGY, Feb. 2017, [Reviewed] - Erratum to: Quartz-Seq: A highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. [Genome Biol. 14, (2013), (R31)]
Yohei Sasagawa; Itoshi Nikaido; Tetsutaro Hayashi; Hiroki Danno; Kenichiro D Uno; Takeshi Imai; Hiroki R. Ueda
Genome Biology, 18 Jan. 2017, [Reviewed] - Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity (vol 14, R31, 2013)
Yohei Sasagawa; Itoshi Nikaido; Tetsutaro Hayashi; Hiroki Danno; Kenichiro D. Uno; Takeshi Imai; Hiroki R. Ueda
GENOME BIOLOGY, Jan. 2017, [Reviewed] - Knockout-Rescue Embryonic Stem Cell-Derived Mouse Reveals Circadian-Period Control by Quality and Quantity of CRY1
Koji L. Ode; Hideki Ukai; Etsuo A. Susaki; Ryohei Narumi; Katsuhiko Matsumoto; Junko Hara; Naoshi Koide; Takaya Abe; Masato T. Kanemaki; Hiroshi Kiyonari; Hiroki R. Ueda
MOLECULAR CELL, Jan. 2017, [Reviewed] - Cochlear Cell Modeling Using Disease-Specific iPSCs Unveils a Degenerative Phenotype and Suggests Treatments for Congenital Progressive Hearing Loss
Makoto Hosoya; Masato Fujioka; Takefumi Sone; Satoshi Okamoto; Wado Akamatsu; Hideki Ukai; Hiroki R. Ueda; Kaoru Ogawa; Tatsuo Matsunaga; Hideyuki Okano
CELL REPORTS, Jan. 2017, [Reviewed] - Next-generation mammalian genetics toward organism-level systems biology.
Susaki EA; Ukai H; Ueda HR
NPJ systems biology and applications, 2017, [Reviewed] - Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins
Ryohei Narumi; Yoshihiro Shimizu; Maki Ukai-Tadenuma; Koji L. Ode; Genki N. Kanda; Yuta Shinohara; Aya Sato; Katsuhiko Matsumoto; Hiroki R. Ueda
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Jun. 2016, [Reviewed] - Involvement of Ca2+-Dependent Hyperpolarization in Sleep Duration in Mammals
Fumiya Tatsuki; Genshiro A. Sunagawa; Shoi Shi; Etsuo A. Susaki; Hiroko Yukinaga; Dimitri Perrin; Kenta Sumiyama; Maki Ukai-Tadenuma; Hiroshi Fujishima; Rei-ichiro Ohno; Daisuke Tone; Koji L. Ode; Katsuhiko Matsumoto; Hiroki R. Ueda
NEURON, Apr. 2016, [Reviewed] - Cell-cycle-independent transitions in temporal identity of mammalian neural progenitor cells
Mayumi Okamoto; Takaki Miyata; Daijiro Konno; Hiroki R. Ueda; Takeya Kasukawa; Mitsuhiro Hashimoto; Fumio Matsuzaki; Ayano Kawaguchi
NATURE COMMUNICATIONS, Apr. 2016, [Reviewed] - Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene.
Genshiro A Sunagawa; Kenta Sumiyama; Maki Ukai-Tadenuma; Dimitri Perrin; Hiroshi Fujishima; Hideki Ukai; Osamu Nishimura; Shoi Shi; Rei-Ichiro Ohno; Ryohei Narumi; Yoshihiro Shimizu; Daisuke Tone; Koji L Ode; Shigehiro Kuraku; Hiroki R Ueda
Cell reports, 26 Jan. 2016, [Reviewed] - Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals
Etsuo A. Susaki; Hiroki R. Ueda
Cell Chemical Biology, 21 Jan. 2016, [Reviewed] - Metabolites as clock hands: Estimation of internal body time using blood metabolomics
Hitoshi Iuchi; Rikuhiro G. Yamada; Hiroki R. Ueda
Neuromethods, 2016 - Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling
Kazuki Tainaka; Akihiro Kuno; Shimpei I. Kubota; Tatzya Murakami; Hiroki R. Ueda
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 32, 2016, [Reviewed] - Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging
Etsuo A. Susaki; Kazuki Tainaka; Dimitri Perrin; Hiroko Yukinaga; Akihiro Kuno; Hiroki R. Ueda
NATURE PROTOCOLS, Nov. 2015, [Reviewed] - Seeing the forest and trees: whole-body and whole-brain imaging for circadian biology
Koji L. Ode; Hiroki R. Ueda
DIABETES OBESITY & METABOLISM, Sep. 2015, [Reviewed] - Trans-ancestry mutational landscape of hepatocellular carcinoma genomes
Yasushi Totoki; Kenji Tatsuno; Kyle R. Covington; Hiroki Ueda; Chad J. Creighton; Mamoru Kato; Shingo Tsuji; Lawrence A. Donehower; Betty L. Slagle; Hiromi Nakamura; Shogo Yamamoto; Eve Shinbrot; Natsuko Hama; Megan Lehmkuhl; Fumie Hosoda; Yasuhito Arai; Kim Walker; Mahmoud Dahdouli; Kengo Gotoh; Genta Nagae; Marie-Claude Gingras; Donna M. Muzny; Hidenori Ojima; Kazuaki Shimada; Yutaka Midorikawa; John A. Goss; Ronald Cotton; Akimasa Hayashi; Junji Shibahara; Shumpei Ishikawa; Jacfranz Guiteau; Mariko Tanaka; Tomoko Urushidate; Shoko Ohashi; Naoko Okada; Harsha Doddapaneni; Min Wang; Yiming Zhu; Huyen Dinh; Takuji Okusaka; Norihiro Kokudo; Tomoo Kosuge; Tadatoshi Takayama; Masashi Fukayama; Richard A. Gibbs; David A. Wheeler; Hiroyuki Aburatani; Tatsuhiro Shibata
NATURE GENETICS, Dec. 2014, [Reviewed] - Whole-Body Imaging with Single-Cell Resolution by Tissue Decolorization
Kazuki Tainaka; Shimpei I. Kubota; Takeru Q. Suyama; Etsuo A. Susaki; Dimitri Perrin; Maki Ukai-Tadenuma; Hideki Ukai; Hiroki R. Ueda
CELL, Nov. 2014, [Reviewed] - A Mammalian Circadian Clock Model Incorporating Daytime Expression Elements
Craig C. Jolley; Maki Ukai-Tadenuma; Dimitri Perrin; Hiroki R. Ueda
BIOPHYSICAL JOURNAL, Sep. 2014, [Reviewed] - Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma
Miwako Kakiuchi; Takashi Nishizawa; Hiroki Ueda; Kengo Gotoh; Atsushi Tanaka; Akimasa Hayashi; Shogo Yamamoto; Kenji Tatsuno; Hiroto Katoh; Yoshiaki Watanabe; Takashi Ichimura; Tetsuo Ushiku; Shinichi Funahashi; Keisuke Tateishi; Ikuo Wada; Nobuyuki Shimizu; Sachiyo Nomura; Kazuhiko Koike; Yasuyuki Seto; Masashi Fukayama; Hiroyuki Aburatani; Shumpei Ishikawa
NATURE GENETICS, Jun. 2014, [Reviewed] - [Multilayered control of the Mammalian circadian system].
Ode KL; Ueda HR
Brain and nerve = Shinkei kenkyu no shinpo, Jun. 2014, [Reviewed] - Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis
Etsuo A. Susaki; Kazuki Tainaka; Dimitri Perrin; Fumiaki Kishino; Takehiro Tawara; Tomonobu M. Watanabe; Chihiro Yokoyama; Hirotaka Onoe; Megumi Eguchi; Shun Yamaguchi; Takaya Abe; Hiroshi Kiyonari; Yoshihiro Shimizu; Atsushi Miyawaki; Hideo Yokota; Hiroki R. Ueda
CELL, Apr. 2014, [Reviewed] - Non-Enzymatic DNA Cleavage Reaction Induced by 5-Ethynyluracil in Methylamine Aqueous Solution and Application to DNA Concatenation
Shuji Ikeda; Kazuki Tainaka; Katsuhiko Matsumoto; Yuta Shinohara; Koji L. Ode; Etsuo A. Susaki; Hiroki R. Ueda
PLOS ONE, Mar. 2014, [Reviewed] - Context-Dependent Wiring of Sox2 Regulatory Networks for Self-Renewal of Embryonic and Trophoblast Stem Cells
Kenjiro Adachi; Itoshi Nikaido; Hiroshi Ohta; Satoshi Ohtsuka; Hiroki Ura; Mitsutaka Kadota; Teruhiko Wakayama; Hiroki R. Ueda; Hitoshi Niwa
MOLECULAR CELL, Nov. 2013, [Reviewed] - Different circadian expression of major matrix-related genes in various types of cartilage: modulation by light-dark conditions
Kiyomasa K. Honda; Takeshi Kawamoto; Hiroki R. Ueda; Ayumu Nakashima; Taichi Ueshima; Rikuhiro G. Yamada; Masahiro Nishimura; Ryo Oda; Shigeo Nakamura; Tomoko Kojima; Mitsuhide Noshiro; Katsumi Fujimoto; Seiichi Hashimoto; Yukio Kato
JOURNAL OF BIOCHEMISTRY, Oct. 2013, [Reviewed] - Picrotoxin dramatically speeds the mammalian circadian clock independent of Cys-loop receptors
G. Mark Freeman; Masato Nakajima; Hiroki R. Ueda; Erik D. Herzog
JOURNAL OF NEUROPHYSIOLOGY, Jul. 2013, [Reviewed] - Establishment of TSH beta real-time monitoring system in mammalian photoperiodism
Kaori Tsujino; Ryohei Narumi; Koh-hei Masumoto; Etsuo A. Susaki; Yuta Shinohara; Takaya Abe; Masayuki Iigo; Atsushi Wada; Mamoru Nagano; Yasufumi Shigeyoshi; Hiroki R. Ueda
GENES TO CELLS, Jul. 2013, [Reviewed] - FASTER: An unsupervised fully automated sleep staging method for mice
Genshiro A. Sunagawa; Hiroyoshi Séi; Shigeki Shimba; Yoshihiro Urade; Hiroki R. Ueda
Genes to Cells, Jun. 2013, [Reviewed] - Quartz-Seq: A highly reproducible and sensitive single-cell RNA sequencing method, reveals nongenetic gene-expression heterogeneity
Yohei Sasagawa; Itoshi Nikaido; Tetsutaro Hayashi; Hiroki Danno; Kenichiro D. Uno; Takeshi Imai; Hiroki R Ueda
Genome Biology, 17 Apr. 2013, [Reviewed] - Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity.
Sasagawa Y; Nikaido I; Hayashi T; Danno H; Uno KD; Imai T; Ueda HR
Genome biology, Apr. 2013, [Reviewed] - An automated system for high-throughput single cell-based breeding
Nobuo Yoshimoto; Akiko Kida; Xu Jie; Masaya Kurokawa; Masumi Iijima; Tomoaki Niimi; Andres D. Maturana; Itoshi Nikaido; Hiroki R. Ueda; Kenji Tatematsu; Katsuyuki Tanizawa; Akihiko Kondo; Ikuo Fujii; Shun'ichi Kuroda
SCIENTIFIC REPORTS, Feb. 2013, [Reviewed] - 1P283 From cell-autonomous circadian clocks to tissue-level timekeeping(25. Equality Nonequilibrium state & Biological rhythm,Poster)
Jolley Craig; Ukai-Tadenuma Maki; Perrin Dimitri; Ueda Hiroki
Seibutsu Butsuri, 2013 - Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity
Yohei Sasagawa; Itoshi Nikaido; Tetsutaro Hayashi; Hiroki Danno; Kenichiro D. Uno; Takeshi Imai; Hiroki R. Ueda
GENOME BIOLOGY, 2013, [Reviewed] - Mammalian circadian clock: The roles of transcriptional repression and delay
Yoichi Minami; Koji L. Ode; Hiroki R. Ueda
Handbook of Experimental Pharmacology, 2013, [Reviewed] - A Design Principle for a Posttranslational Biochemical Oscillator
Craig C. Jolley; Koji L. Ode; Hiroki R. Ueda
CELL REPORTS, Oct. 2012, [Reviewed] - Human blood metabolite timetable indicates internal body time
Takeya Kasukawa; Masahiro Sugimoto; Akiko Hida; Yoichi Minami; Masayo Mori; Sato Honma; Ken-ichi Honma; Kazuo Mishima; Tomoyoshi Soga; Hiroki R. Ueda
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Sep. 2012, [Reviewed] - Transcriptome Tomography for Brain Analysis in the Web-Accessible Anatomical Space
Yuko Okamura-Oho; Kazuro Shimokawa; Satoko Takemoto; Asami Hirakiyama; Sakiko Nakamura; Yuki Tsujimura; Masaomi Nishimura; Takeya Kasukawa; Koh-hei Masumoto; Itoshi Nikaido; Yasufumi Shigeyoshi; Hiroki R. Ueda; Gang Song; James Gee; Ryutaro Himeno; Hideo Yokota
PLOS ONE, Sep. 2012, [Reviewed] - Identification of a Novel Cryptochrome Differentiating Domain Required for Feedback Repression in Circadian Clock Function
Sanjoy K. Khan; Haiyan Xu; Maki Ukai-Tadenuma; Brittany Burton; Yongmei Wang; Hiroki R. Ueda; Andrew C. Liu
JOURNAL OF BIOLOGICAL CHEMISTRY, Jul. 2012, [Reviewed] - 2C1522 Modeling the mammalian circadian clock(Mathematical Biology,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)
Jolley Craig; Ueda Hiroki
Seibutsu Butsuri, 2012 - Quantitative Expression Profile of Distinct Functional Regions in the Adult Mouse Brain
Takeya Kasukawa; Koh-hei Masumoto; Itoshi Nikaido; Mamoru Nagano; Kenichiro D. Uno; Kaori Tsujino; Carina Hanashima; Yasufumi Shigeyoshi; Hiroki R. Ueda
PLOS ONE, Aug. 2011, [Reviewed] - Perturbation analyses of intermolecular interactions
Yohei M. Koyama; Tetsuya J. Kobayashi; Hiroki R. Ueda
PHYSICAL REVIEW E, Aug. 2011, [Reviewed] - Understanding systems-level properties: timely stories from the study of clocks
John B. Hogenesch; Hiroki R. Ueda
NATURE REVIEWS GENETICS, Jun. 2011, [Reviewed] - Acute induction of Eya3 by late-night light stimulation triggers TSH beta expression in photoperiodism
Koh-hei Masumoto; Maki Ukai-Tadenuma; Takeya Kasukawa; Mamoru Nagano; Kenichiro D. Uno; Kaori Tsujino; Kazumasa Horikawa; Yasufumi Shigeyoshi; Hiroki R. Ueda
NEUROSCIENCE RESEARCH, 2011 - Delay in Feedback Repression by Cryptochrome 1 Is Required for Circadian Clock Function
Maki Ukai-Tadenuma; Rikuhiro G. Yamada; Haiyan Xu; Juergen A. Ripperger; Andrew C. Liu; Hiroki R. Ueda
CELL, Jan. 2011, [Reviewed] - Acute Induction of Eya3 by Late-Night Light Stimulation Triggers TSH beta Expression in Photoperiodism
Koh-hei Masumoto; Maki Ukai-Tadenuma; Takeya Kasukawa; Mamoru Nagano; Kenichiro D. Uno; Kaori Tsujino; Kazumasa Horikawa; Yasufumi Shigeyoshi; Hiroki R. Ueda
CURRENT BIOLOGY, Dec. 2010, [Reviewed] - Transcriptomic landscape of the primitive streak.
Cantas Alev; Yuping Wu; Takeya Kasukawa; Lars M Jakt; Hiroki R Ueda; Guojun Sheng
Development (Cambridge, England), 01 Sep. 2010, [Reviewed] - Atypical Cadherins Dachsous and Fat Control Dynamics of Noncentrosomal Microtubules in Planar Cell Polarity
Toshiyuki Harumoto; Masayoshi Ito; Yuko Shimada; Tetsuya J. Kobayashi; Hiroki R. Ueda; Bingwei Lu; Tadashi Uemura
DEVELOPMENTAL CELL, Sep. 2010, [Reviewed] - Challenges in synthetically designing mammalian circadian clocks
Etsuo A. Susaki; Joerg Stelling; Hiroki R. Ueda
CURRENT OPINION IN BIOTECHNOLOGY, Aug. 2010, [Reviewed] - Systems Biology of Mammalian Circadian Clocks
Hideki Ukai; Hiroki R. Ueda
ANNUAL REVIEW OF PHYSIOLOGY, 2010, [Reviewed] - Physical simulation of the transcriptional network of mammalian circadian clocks
Ukai-Tadenuma M; Kasukawa T; Ueda HR
Protein, nucleic acid and enzyme, Dec. 2009 - Temperature-insensitive reaction in the mammalian circadian clock
Masato Nakajima; Hideki Ukai; Yasushi Isojima; Hiroki R. Ueda
SLEEP AND BIOLOGICAL RHYTHMS, Oct. 2009, [Reviewed] - CKI epsilon/delta-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock
Yasushi Isojima; Masato Nakajima; Hideki Ukai; Hiroshi Fujishima; Rikuhiro G. Yamada; Koh-hei Masumoto; Reiko Kiuchi; Mayumi Ishida; Maki Ukai-Tadenuma; Yoichi Minami; Ryotaku Kito; Kazuki Nakao; Wataru Kishimoto; Seung-Hee Yoo; Kazuhiro Shimomura; Toshifumi Takao; Atsuko Takano; Toshio Kojima; Katsuya Nagai; Yoshiyuki Sakaki; Joseph S. Takahashi; Hiroki R. Ueda
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Sep. 2009, [Reviewed] - Measurement of internal body time by blood metabolomics
Yoichi Minami; Takeya Kasukawa; Yuji Kakazu; Masayuki Iigo; Masahiro Sugimoto; Satsuki Ikeda; Akira Yasui; Gijsbertus T. J. van der Horst; Tomoyoshi Soga; Hiroki R. Ueda
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Jun. 2009, [Reviewed] - Genetic and Molecular Analysis of Wild-Derived Arrhythmic Mice
Tsuyoshi Watanabe; Tohru Suzuki; Akira Ishikawa; Yuki Yokota; Hiroki R. Ueda; Rikuhiro G. Yamada; Hajime Tei; Saki Imai; Shigeru Tomida; Junya Kobayashi; Emiko Naito; Shinobu Yasuo; Nobuhiro Nakao; Takao Namikawa; Takashi Yoshimura; Shizufumi Ebihara
PLOS ONE, Jan. 2009, [Reviewed] - JBIR-26, a Novel Natural Compound from Streptomyces sp AK-AH76, Regulates Mammalian Circadian Clock
Miho Izumikawa; Hideki Ukai; Motoki Takagi; Hiroki R. Ueda; Kazuo Shin-ya
JOURNAL OF ANTIBIOTICS, Dec. 2008, [Reviewed] - Predicting Perfect Adaptation Motifs in Reaction Kinetic Networks
Tormod Drengstig; Hiroki R. Ueda; Peter Ruoff
JOURNAL OF PHYSICAL CHEMISTRY B, Dec. 2008, [Reviewed] - Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks
Maki Ukai-Tadenuma; Takeya Kasukawa; Hiroki R. Ueda
NATURE CELL BIOLOGY, Oct. 2008, [Reviewed] - Perturbational formulation of principal component analysis in molecular dynamics simulation
Yohei M. Koyama; Tetsuya J. Kobayashi; Shuji Tomoda; Hiroki R. Ueda
PHYSICAL REVIEW E, Oct. 2008, [Reviewed] - Single-cell gene profiling defines differential progenitor subclasses in mammalian neurogenesis
Ayano Kawaguchi; Tomoko Ikawa; Takeya Kasukawa; Hiroki R. Ueda; Kazuki Kurimoto; Mitinori Saitou; Fumio Matsuzaki
DEVELOPMENT, Sep. 2008, [Reviewed] - Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock
Yuichi Kumaki; Maki Ukai-Tadenuma; Ken-ichiro D. Uno; Junko Nishio; Koh-hei Masumoto; Mamoru Nagano; Takashi Komori; Yasufumi Shigeyoshi; John B. Hogenesch; Hiroki R. Ueda
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Sep. 2008, [Reviewed] - Detection of a circadian enhancer in the mDbp promoter using prokaryotic transposon vector-based strategy
Yota B. Kiyohara; Keigo Nishii; Maki Ukai-Tadenuma; Hiroki R. Ueda; Yasuo Uchiyama; Kazuhiro Yagita
NUCLEIC ACIDS RESEARCH, Mar. 2008, [Reviewed] - Thyrotrophin in the pars tuberalis triggers photoperiodic response
Nobuhiro Nakao; Hiroko Ono; Takashi Yamamura; Tsubasa Anraku; Tsuyoshi Takagi; Kumiko Higashi; Shinobu Yasuo; Yasuhiro Katou; Saburo Kageyama; Yumiko Uno; Takeya Kasukawa; Masayuki Iigo; Peter J. Sharp; Atsushi Iwasawa; Yutaka Suzuki; Sumio Sugano; Teruyuki Niimi; Makoto Mizutani; Takao Namikawa; Shizufumi Ebihara; Hiroki R. Ueda; Takashi Yoshimura
NATURE, Mar. 2008, [Reviewed] - Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks
Hideki Ukai; Tetsuya J. Kobayashi; Mamoru Nagano; Koh-hei Masumoto; Mitsugu Sujino; Takao Kondo; Kazuhiro Yagita; Yasufumi Shigeyoshi; Hiroki R. Ueda
NATURE CELL BIOLOGY, Nov. 2007, [Reviewed] - A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock
Akira Matsumoto; Maki Ukai-Tadenuma; Rikuhiro G. Yamada; Jerry Houl; Kenichiro D. Uno; Takeya Kasukawa; Brigitte Dauwalder; Taichi Q. Itoh; Kuniaki Takahashi; Ryu Ueda; Paul E. Hardin; Teiichi Tanimura; Hiroki R. Ueda
GENES & DEVELOPMENT, Jul. 2007, [Reviewed] - Desynchronization of noisy multi-cellular clocks underlies the population-level singularity Behavior of mammalian circadian clock
Tetsuya J. Kobayashi; Hideki Ukai; Hiroki R. Ueda
NOISE AND FLUCTUATIONS, 2007, [Reviewed] - Microarrays: quality control and hybridization protocol.
Uno K; Ueda HR
Methods in molecular biology (Clifton, N.J.), 2007, [Reviewed] - Microarrays: statistical methods for circadian rhythms.
Yamada R; Ueda HR
Methods in molecular biology (Clifton, N.J.), 2007, [Reviewed] - Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b
A Tsumura; T Hayakawa; Y Kumaki; S Takebayashi; M Sakaue; C Matsuoka; K Shimotohno; F Ishikawa; E Li; HR Ueda; J Nakayama; M Okano
GENES TO CELLS, Jul. 2006, [Reviewed] - The BMAL1 C terminus regulates the circadian transcription feedback loop
Yota B. Kiyohara; Sayaka Tagao; Filippo Tamanini; Akira Morita; Yukiko Sugisawa; Maya Yasuda; Iori Yamanaka; Hiroki R. Ueda; Gijsbertus T. J. van der Horst; Takao Kondo; Kazuhiro Yagita
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Jun. 2006, [Reviewed] - Feedback repression is required for mammalian circadian clock function
TK Sato; RG Yamada; H Ukai; JE Baggs; LJ Miraglia; TJ Kobayashi; DK Welsh; SA Kay; HR Ueda; JB Hogenesch
NATURE GENETICS, Mar. 2006, [Reviewed] - An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis
K Kurimoto; Y Yabuta; Y Ohinata; Y Ono; KD Uno; RG Yamada; HR Ueda; M Saitou
NUCLEIC ACIDS RESEARCH, 2006, [Reviewed] - Systems biology flowering in the plant clock field
Hiroki R. Ueda
MOLECULAR SYSTEMS BIOLOGY, 2006, [Reviewed] - [Comprehensive and synthetic approaches in developmental biology].
Ueda HR
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, May 2005, [Reviewed] - System-level identification of transcriptional circuits underlying mammalian circadian clocks
HR Ueda; S Hayashi; WB Chen; M Sano; M Machida; Y Shigeyoshi; M Iino; S Hashimoto
NATURE GENETICS, Feb. 2005, [Reviewed] - [Systems biology of spatio-temporal regulation of gene expession].
Ueda HR
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Dec. 2004, [Reviewed] - Molecular-timetable methods for detection of body time and rhythm disorders from single-time-point genome-wide expression profiles
HR Ueda; WB Chen; Y Minami; S Honma; K Honma; M Iino; S Hashimoto
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Aug. 2004, [Reviewed] - Universality and flexibility in gene expression from bacteria to human
HR Ueda; S Hayashi; S Matsuyama; T Yomo; S Hashimoto; SA Kay; JB Hogenesch; M Iino
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Mar. 2004, [Reviewed] - [System analysis of circadian rhythms].
Ueda HR
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme, Jun. 2003, [Reviewed] - The period gene and allochronic reproductive isolation in Bactrocera cucurbitae
T Miyatake; A Matsumoto; T Matsuyama; HR Ueda; T Toyosato; T Tanimura
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Dec. 2002, [Reviewed] - [A systems-biological approach in drug discovery for circadian rhythm disorders].
Ueda HR
Nihon yakurigaku zasshi. Folia pharmacologica Japonica, Nov. 2002, [Reviewed] - A transcription factor response element for gene expression during circadian night
HR Ueda; WB Chen; A Adachi; H Wakamatsu; S Hayashi; T Takasugi; M Nagano; K Nakahama; Y Suzuki; S Sugano; M Iino; Y Shigeyoshi; S Hashimoto
NATURE, Aug. 2002, [Reviewed] - Intercellular coupling mechanism for synchronized and noise-resistant circadian oscillators
HR Ueda; K Hirose; M Iino
JOURNAL OF THEORETICAL BIOLOGY, Jun. 2002, [Reviewed] - Genome-wide transcriptional orchestration of circadian rhythms in Drosophila
HR Ueda; A Matsumoto; M Kawamura; M Iino; T Tanimura; S Hashimoto
JOURNAL OF BIOLOGICAL CHEMISTRY, Apr. 2002, [Reviewed] - Robust oscillations within the interlocked feedback model of Drosophila circadian rhythm
HR Ueda; M Hagiwara; H Kitano
JOURNAL OF THEORETICAL BIOLOGY, Jun. 2001, [Reviewed] - Biology: See it again - For the first time
Seam Luke; Shugo Hamahashi; Koji Kyoda; Hiroki Ueda
IEEE Intelligent Systems and Their Applications, Sep. 1998, [Reviewed]
- Faculty Opinions Recommendation of [Cichon J et al., Nat Neurosci 2023 26(1:39-52)]
Hiroki R. Ueda; Koji L. Ode; Hiroyuki J. Kanaya
Faculty Opinions, 28 Feb. 2023, [Invited] - Whole brain activity atlas of circadian rhythm: A quantitative analysis with tissue clearing, 3D immunostaining, and 3D imaging
山下勝成; 松本桂彦; 松本桂彦; 吉田将太; 吉田将太; 上田泰己; 上田泰己
日本分子生物学会年会プログラム・要旨集(Web), 2023 - Large-scale sleep analysis in youth and neurodevelopmental disorders
MINAMI Yoichi; KISHI Akifumi; UEDA Hiroki
11th Congress of the Asian Society for Child and Adolescent Psychiatry and Allied Professions, 2023, 2023 - Study on the dephosphorylated-modulation of synaptic proteins engaged in sleep-wakefulness regulation
曹思ぎょく; 戸根大輔; 山田陸裕; 隅山健太; 上田泰己; 上田泰己
日本薬理学雑誌, 2023 - Investigating roles of pore-loop cation channels for cortical neuronal synchrony and sleep quality and time
バイエステロッチ マリアネウス; 史蕭逸; 戸根大輔; 大出晃士; 藤島博史; 山田陸裕; 隅山健太; 上田泰己
時間生物学, 2023 - アルツハイマー病関連因子による睡眠要求量制御機構の解析
山浦港生; 山浦港生; 戸根大輔; 山田陸裕; 山田陸裕; 山田陸裕; 木下福章; 木下福章; 上田泰己; 上田泰己; 上田泰己
時間生物学, 2023 - in vitro睡眠評価系を用いた神経伝達と睡眠制御の解析
山本敬太; 山本敬太; YILIN Jiang; 戸根大輔; 戸根大輔; 山田陸裕; 山田陸裕; 上田泰己; 上田泰己; 上田泰己
時間生物学, 2023 - Mammalian sleep regulation by phosphorylation states of CaMKII
戸根大輔; 戸根大輔; 大出晃士; 大出晃士; 張千惠; 上田泰己; 上田泰己
日本薬理学雑誌, 2023 - Phosphorylation hypothesis of sleep-wake control
Koji L Ode; Zhiqing Wen; Hiroki R Ueda
実験医学, Jul. 2022, [Invited] - 霊長類全脳の透明化にむけた新規組織透明化試薬の開発
茂田大地; 茂田大地; 吉田将太; 松本桂彦; 松本桂彦; 洲崎悦生; 洲崎悦生; 洲崎悦生; 上田泰己; 上田泰己
日本先天異常学会学術集会プログラム・抄録集, 2022 - Large-scale sleep measurements using accelerometers: Prospects for the “child sleep checkup”
岸哲史; 南陽一; 田中秀樹; 上田泰己; 岸哲史; 南陽一; 上田泰己; 上田泰己
時間生物学, 2022 - Large-scale sleep analysis in youth and neurodevelopmental disorders.
南陽一; 南陽一; 上田泰己; 上田泰己; 上田泰己
時間生物学, 2022 - Whole-organ pathological profiling with single-cell resolution
久保田晋平; 高橋恵生; 田井中一貴; 江幡正悟; 上田泰己; 宮園浩平
日本病理学会会誌, 2021 - 量子ドットによる透明化組織内エクソソーム蛍光イメージング技術の構築
浦野大智; 湯川博; 湯川博; 湯川博; 西村勇姿; 洲崎悦生; 上田泰己; 馬場嘉信; 馬場嘉信; 馬場嘉信
日本再生医療学会総会(Web), 2021 - Establishing diagnostic technology for transplanted exosomes by integrating fluorescent nanomaterials and tissue clearing technology
浦野大智; 湯川博; 小野島大介; 洲崎悦生; 上田泰己; 馬場嘉信
日本化学会春季年会講演予稿集(CD-ROM), 2020 - 【バイオマテリアル研究に役立つ分析技術・評価法】生体組織の透明化とイメージング技術
吉田 将太; 松本 桂彦; 洲崎 悦生; 上田 泰己
バイオマテリアル-生体材料-, Oct. 2019 - 量子ナノ材料による移植幹細胞・免疫細胞間インタラクションのintra-vital蛍光イメージングと組織透明化技術CUBICの応用
水巻 登志樹; 湯川 博; 北村 晃大; 小野島 大介; 洲崎 悦生; 上田 泰己; 馬場 嘉信
Organ Biology, Oct. 2019 - Organ Biology・量子ドットによる完全透明化組織内移植幹細胞イメージング
水巻登志樹; 湯川博; 湯川博; 小野島大介; 小野島大介; 洲崎悦生; 上田泰己; 馬場嘉信; 馬場嘉信; 馬場嘉信
Organ Biology・量子ドットによる完全透明化組織内移植幹細胞イメージング, Sep. 2019 - 概日時計と睡眠
Koji L. Ode; Hiroki R. Ueda
Clinical Neuroscience, Jul. 2019 - 核小体蛋白によるアルブミンエンドサイトーシス制御機構
浦江 聖也; 張田 豊; 宇田川 智宏; 大出 晃士; 長浜 正巳; 上田 泰己; 南学 正臣; 岡 明
日本腎臓学会誌, May 2019 - 組織を見る新技術 病理組織標本の透明化と3次元イメージング
野島 聡; 洲崎 悦生; 上田 泰己; 森井 英一
日本病理学会会誌, Apr. 2019 - 時間生物学からサーカディアン・メディシンへ 概日リズム撹乱と健康問題の因果性に挑む 哺乳類概日時計の周期長決定要因を探る
大出晃士; 上田泰己; 大出晃士; 上田泰己
実験医学, 01 Feb. 2019 - Analytical techniques and assessment methods for biomaterials research: Tissue Clearing and Imaging Technology
吉田将太; 吉田将太; 松本桂彦; 洲崎悦生; 上田泰己; 上田泰己
バイオマテリアル(Web), 2019 - 量子ドットを用いた透明化組織内移植幹細胞イメージング診断技術の開発
水巻登志樹; 湯川博; 湯川博; 小野島大介; 小野島大介; 洲崎悦生; 上田泰己; 馬場嘉信; 馬場嘉信; 馬場嘉信
日本DDS学会学術集会プログラム予稿集, 2019 - Whole-organ cells profiling using tissue-clearing method "CUBIC"
三谷 智樹; 松本 桂彦; 上田 泰己
Precision medicine = プレシジョンメディシン, Jan. 2019 - Single cell imaging of transplanted stem cells in the whole cleared tissue by quantum dots
Mizumaki Toshiki; Yukawa Hiroshi; A. Susaki Etsuo; R. Ueda Hiroki; Baba Yoshinobu
Organ Biology, 2019 - 見る脂質のページ〈透明化による全細胞解析〉第3回 ヒト組織透明化~ヒト病理組織を中心に~
野島聡; 洲崎悦生; 洲崎悦生; 洲崎悦生; 森井英一; 森井英一; 上田泰己; 上田泰己
Lipid, 10 Oct. 2018 - 量子ドットによる完全透明化組織内移植幹細胞イメージング
水巻 登志樹; 湯川 博; 小野島 大介; 洲崎 悦夫; 上田 泰己; 馬場 嘉信
バイオイメージング, Aug. 2018 - 快人快説 最先端の研究テクノロジー紹介(6)臓器の透明化技術とその臨床応用
野島 聡; 洲﨑 悦生; 森井 英一; 上田 泰己
LiSA : Life support and anesthesia, Jul. 2018 - MEDICAL TOPICS 第65回 組織透明化技術CUBICを用いる肺がん細胞の転移解析
高橋恵生; 久保田晋平; 上田泰己; 宮園浩平
Lung Perspectives, 23 Feb. 2018 - 遺伝性パーキンソン病患者iPS細胞由来神経細胞における経時的なmRNA発現解析
太田悦朗; 太田悦朗; 太田悦朗; 太田悦朗; 曽根岳史; 大日方友理; 鵜飼英樹; 久松知子; 北川季子; 石川充; 駒野肇; 上田泰己; 上田泰己; 上田泰己; 小幡文弥; 小幡文弥; 小幡文弥; 川村俊彦; 川村俊彦; 岡野栄之
日本再生医療学会総会(Web), 2018 - 質量分析によるアミロイドーシス診断系の開発
永島良樹; 永島良樹; 小川真貴子; 大出晃士; 堂本裕加子; 清水義宏; 深山正久; 上田泰己; 上田泰己
日本血管生物医学会学術集会プログラム・抄録集, 2018 - CUBIC-癌分析法を用いた癌転移の全身/全組織的特性解析(Whole-body/organ profiling of cancer metastasis with CUBIC-Cancer analysis)
久保田 晋平; 高橋 恵生; 西田 純; 江幡 正悟; 田井中 一貴; 上田 泰己; 宮園 浩平
生命科学系学会合同年次大会, Dec. 2017 - CUBIC-癌分析法を用いた癌転移の全身/全組織的特性解析(Whole-body/organ profiling of cancer metastasis with CUBIC-Cancer analysis)
久保田 晋平; 高橋 恵生; 西田 純; 江幡 正悟; 田井中 一貴; 上田 泰己; 宮園 浩平
生命科学系学会合同年次大会, Dec. 2017 - 2017年ノーベル生理学・医学賞:概日リズムを制御する分子機構の発見
大出 晃士; 上田 泰己
実験医学, Nov. 2017 - 細胞多様性解明に資する光技術―見て,動かす I.見る,観る,視る 透明化技術とシステムバイオロジー
小野宏晃; 洲崎悦生; 洲崎悦生; 洲崎悦生; 上田泰己; 上田泰己
生体の科学, 15 Oct. 2017 - トリプルCRISPR法による第一世代両アリル完全ノックアウトマウス作製
隅山健太; 砂川玄志郎; 鵜飼(蓼沼)磨貴; ディミトリー ペリン; 上田泰己
日本実験動物学会総会講演要旨集, 28 Apr. 2017 - Molecular Mechanisms of Circadian Rhythm and Sleep Homeostasis
昆一弘; 大出晃士; 大出晃士; 上田泰己; 上田泰己
Brain and nerve, Mar. 2017 - 遺伝性パーキンソン病患者iPS細胞におけるゲノム編集iPS細胞の樹立
太田悦朗; 太田悦朗; 太田悦朗; 太田悦朗; 曽根岳史; 大日方友理; 鵜飼英樹; 久松知子; 北川季子; 石川充; 石川充; 石川充; 駒野肇; 上田泰己; 上田泰己; 上田泰己; 小幡文弥; 小幡文弥; 小幡文弥; 岡野栄之
再生医療, 01 Feb. 2017 - バイオ・ライフとナノテク・材料の融合領域 4.生体組織・個体レベル 4.1 全脳・全身―細胞解像度イメージング
上田泰己; 上田泰己
俯瞰ワークショップ報告書 ナノテクノロジー・材料分野 領域別分科会 「バイオ・ライフとナノテク・材料の融合領域」 平成28年, 2017 - 質量分析を用いた新規絶対タンパク定量法による時計タンパクの定量
鳴海良平; 鳴海良平; 清水義宏; 鵜飼磨貴; 大出晃士; 大出晃士; 神田元紀; 篠原雄太; 佐藤文; 松本桂彦; 上田泰己; 上田泰己
日本プロテオーム学会大会プログラム・抄録集, 2017 - Protein Absolute Quantification Using Cell-Free-Synthesized Peptide
Narumi Ryohei; Shimizu Yoshihiro; R. Ueda Hiroki
Proteome Letters, 2017 - A method for mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins
Narumi R.; Shimizu Y.; Ukai-Tadenuma M.; Ode K.L.; Kanda G.N.; Shinohara Y.; Sato A.; Matsumoto K.; R.Ueda H.
Abstracts for Annual Meeting of Japanese Proteomics Society, 2017 - Triple-target CRISPR enabled almost perfect whole-body bi-allelic knockouts at first generation
Kenta Sumiyama; Genshiro Sunagawa; Maki Ukai-Tadenuma; Dimitri Perrin; Hiroki Ueda
GENES & GENETIC SYSTEMS, Dec. 2016 - Regulatory mechanism of sleep duration by membrane potential of neurons in mammals
桑島 謙; 大出 晃士; 上田 泰己
生体の科学, Nov. 2016 - トリプルCRISPR法を用いた高効率な遺伝子ノックアウトマウス作出体制の実現
大野怜一朗; 史蕭逸; 戸根大輔; 大出晃士; 洲崎悦生; 洲崎悦生; 上田泰己; 上田泰己
日本実験動物技術者協会総会講演要旨集, 29 Sep. 2016 - トリプルCRISPR法による第一世代での両アリル完全ノックアウトマウス作製
隅山健太; 砂川玄志郎; 鵜飼(蓼沼)磨貴; PERRIN Dimitri; 上田泰己
日本遺伝学会大会プログラム・予稿集, 22 Aug. 2016 - 一細胞遺伝子解析 三次元組織における網羅的な一細胞解析のためのオミクス的アプローチ
茂田大地; 金子みずほ; 洲崎悦生; 洲崎悦生; 洲崎悦生; 上田泰己; 上田泰己
医学のあゆみ, 23 Jul. 2016 - Novel post-translational regulations of SK channel revealed by high-throughput and high-resolution ion channel profiling
Daisuke Tone; Koji L. Ode; Hiroki R. Ueda
INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY, Jun. 2016 - The role of Ca2+-dependent hyperpolarization pathway underlying sleep homeostasis
Shoi Shi; Koji L. Ode; Hiroki R. Ueda
INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY, Jun. 2016 - Current Progress in Tissue Clearing and Imaging Methods
勝俣 敬寛; 洲﨑 悦生; 上田 泰己
内分泌・糖尿病・代謝内科 = Endocrinology, diabetology & metabolism, May 2016 - 膵内副交感神経節と膵島の組織学的関係
高橋 啓範; 今井 淳太; 井泉 知仁; 山本 淳平; 川名 洋平; 遠藤 彰; 菅原 裕人; 洲崎 悦生; 畠山 裕康; 澤田 正二郎; 山田 哲也; 上田 泰己; 神崎 展; 片桐 秀樹
糖尿病, Apr. 2016 - Pharmacological analysis of sleep consolidation mechanisms in mammals
Qianhui Zhang; Hiroko Yukinaga; Dimitri Perrin; Kazuki Tainaka; Hiroki R. Ueda
JOURNAL OF PHARMACOLOGICAL SCIENCES, Mar. 2016 - Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals
Etsuo A. Susaki; Hiroki R. Ueda
CELL CHEMICAL BIOLOGY, Jan. 2016 - トリプルCRISPR法による第一世代での両アリル完全ノックアウトマウス作製
隅山健太; 砂川玄志郎; 鵜飼(蓼沼)磨貴; DIMITRI Perrin; DIMITRI Perrin; 上田泰己
日本細胞生物学会大会(Web), 2016 - 副交感神経系成立機構の理解に向けた特異抗体作成と神経ネットワークの可視化
渡邉忠由; 清元貴大; 田所竜介; 洲崎悦生; 洲崎悦生; 上田泰己; 上田泰己; 高瀬悠太; 高橋淑子
日本分子生物学会年会プログラム・要旨集(Web), 2016 - 膵内副交感神経節と膵島の組織学的関係
高橋啓範; 今井淳太; 井泉知仁; 山本淳平; 川名洋平; 遠藤彰; 菅原裕人; 洲崎悦生; 畠山裕康; 澤田正二郎; 山田哲也; 上田泰己; 神崎展; 片桐秀樹
糖尿病(Web), 2016 - Towards organisms-level systems biology
UEDA Hiroki R.
Annual Meeting of the Japanese Society of Toxicology, 2016 - タンパク質可視化・制御の新技術 細胞局所から個体まで CUBIC 化学混合液を用いた単一細胞レベルでの全器官と全組織のイメージング法(CUBIC: whole-organ, whole-body imaging with single-cell resolution using chemical cocktails)
田井中 一貴; 洲崎 悦生; 久保田 晋平; 上田 泰己
日本生化学会大会・日本分子生物学会年会合同大会講演要旨集, Dec. 2015 - The post‐translational landscape of mammalian circadian clock: an MS‐based analysis of CRY1 and beyond
大出晃士; 大出晃士; 上田泰己; 上田泰己
日本生化学会大会(Web), 2015 - マウス全脳・全身を透明化し1細胞解像度で観察する新技術を開発 アミノアルコールを含む化合物カクテルと高速イメージング・画像解析を組み合わせた「CUBIC」技術を実現
久野朗広; 久野朗広; 久野朗広; 洲崎悦生; 洲崎悦生; 田井中一貴; 田井中一貴; 上田泰己; 上田泰己
化学と生物, 2015 - A Simple Protocol to Clear and Transparentize the Brain
KISHINO Fumiaki; A. SUSAKI Etsuo; R. UEDA Hiroki
Seibutsu Butsuri, 2015 - マウス全脳・全身を透明化し1細胞解像度で観察する新技術を開発:アミノアルコールを含む化合物カクテルと高速イメージング・画像解析を組み合わせた「CUBIC」技術を実現
久野 朗広; 洲崎 悦生; 田井中 一貴; 上田 泰己
化学と生物, 2015 - 酸素プラズマパターニングを利用したシンプルなPDMSバルブの開発
森口裕之; 川井隆之; 神田元紀; 山田陸裕; 上田泰己; 田中陽
化学とマイクロ・ナノシステム学会研究会講演要旨集, 02 Oct. 2014 - 編集長インタビュー 上田泰己 医師/東京大学大学院医学系研究科 教授/理化学研究所生命システム研究センター グループディレクター 体内時計から生命の神秘に迫る
上田 泰己; 本多 昭彦
メディカル朝日, Jun. 2014 - 細胞の少数性と多様性に挑む―シングルセルアナリシス B.次世代シーケンサーを用いた細胞多様性の解明 生体リズム・発生現象における1細胞シーケンスを用いた細胞多様性の解明
山田陸裕; 洲崎悦生; 上田泰己
生体の科学, 15 Apr. 2014 - Single-cell sequencing to analyze cellular diversity in circadian rhythms and developmental processes
山田 陸裕; 洲﨑 悦生; 上田 泰己
生体の科学, Mar. 2014 - 睡眠基礎研究の萌芽的シンポジウム ヒト血液代謝産物を用いた2時点の血液サンプルによる体内時刻測定法
粕川 雄也; 杉本 昌弘; 肥田 昌子; 南 陽一; 森 雅代; 本間 さと; 本間 研一; 三島 和夫; 曽我 朋義; 上田 泰己
日本睡眠学会定期学術集会プログラム・抄録集, Jun. 2013 - 全組織スキャンニングによるシステミックな3次元遺伝子発現プロファイリング
洲崎悦生; 田井中一貴; 渡邉朋信; 清成寛; 阿部高也; 宮脇敦史; 今井猛; 上田泰己
日本分子生物学会年会プログラム・要旨集(Web), 2013 - 科学技術・研究開発の国際比較 2012年版
油谷浩幸; 有田正規; 伊藤武彦; 上田泰己; 小田吉哉; 黒川顕; 黒田真也; 白髭克彦; 菅裕明; 菅野純夫; 曽我朋義; 角田達彦; 永井健治; 中村幸夫; 西村善文; 平岡泰; 藤谷秀章; 吉田稔; 辻省次; 入來篤史; 磯村宣和; 伊藤啓; 井上治久; 糸川昌成; 岩坪威; 梅田聡; 漆谷真; 大隅典子; 岡野栄之; 岡村康司; 尾崎紀夫; 笠井清登; 加藤忠史; 兼子直; 金生由紀子; 上口裕之; 河野憲二; 神作憲司; 北澤茂; 窪田芳之
ライフサイエンス分野 科学技術・研究開発の国際比較 2012年版, 2012 - ヒト血液代謝産物を用いた分子時刻表法による簡便なヒト体内時計の同定方法
粕川雄也; 杉本昌弘; 肥田昌子; 南陽一; 森雅代; 本間さと; 本間研一; 三島和夫; 曽我朋義; 上田泰己
日本分子生物学会年会プログラム・要旨集(Web), 2012 - K-069 体内の時間について : 体内時計と体内力レンダー(先端科学と理学療法,特別講演IV,プロフェッション!新たなるステージへ,第47回日本理学療法学術大会)
上田 泰己
理学療法学Supplement, 2012 - Species-specific pseudogene insertions generate cis-acting RNA for promoter demethylation in the macaque.
Uesaka M; Nishimura O; Uno K; Ueda HR; Oishi T; Imai H; Agata K; Imamura T
第34回日本分子生物学会年会 (2011/12/16, 横浜)., 2011, [Reviewed] - ライフサイエンス分野 科学技術・研究開発の国際比較 2011年版
油谷浩幸; 有田正規; 伊藤武彦; 上田泰己; 小田吉哉; 黒川顕; 黒田真也; 白髭克彦; 菅裕明; 菅野純夫; 曽我朋義; 角田達彦; 永井健治; 中村幸夫; 西村善文; 平岡泰; 藤谷秀章; 吉田稔; 辻省次; 入來篤史; 磯村宣和; 伊藤啓; 井上治久; 糸川昌成; 岩坪威; 梅田聡; 漆谷真; 大隅典子; 岡野栄之; 岡村康司; 尾崎紀夫; 笠井清登; 加藤忠史; 兼子直; 加野真一; 上口裕之; 河野憲二; 神作憲司; 北澤茂; 窪田芳之
科学技術・研究開発の国際比較 2011年版 ライフサイエンス分野, 2011 - Gravure & interview: RIKEN Center for Developmental Biology Laboratory for System Biology
UEDA Hiroki R.; KOTANI Kiyoshi
Journal of the Japan Society for Precision Engineering, 2011 - Design Principle of the Mammalian Circadian Clock : Molecular Mechanisms for Phase Control, Delay and Temperature Compensation
中嶋 正人; 鵜飼-蓼沼 磨貴; 上田 泰己
細胞工学, 2011 - 座談会 時代の担い手「若手」が創るこれからの科学技術、日本、そして未来 (特集 未来を創造する科学技術の新展開--持続可能な地球と人類の繁栄に向けた科学技術イノベーション政策)
上田 泰己; 榛葉 信久; 菅 裕明
文部科学時報, Mar. 2010 - Measurement of body time by using metabolomics
Takeya Kasukawa; Yoichi Minami; Hiroki R. Ueda
NEUROSCIENCE RESEARCH, 2010 - SYSTEMS BIOLOGY OF MAMMALIAN CIRCADIAN CLOCKS
Ueda Hiroki
Abstracts of Annual meeting of Japanese Society for the Study of Xenobiotics, 2010 - 『生物の再生・形・時計』 体内の時間について
上田泰己
Program and Abstract Book. Annual Meeting for the Japanese Society of Developmental Biologists, 2010 - マウス・サル脳における種特異的promoter‐associated noncoding RNAの同定
上坂将弘; 上田泰己; 宇野健一郎; 阿形清和; 今村拓也
Journal of Reproduction and Development, 25 Aug. 2009 - データを正確に解釈するための6つのポイント No.5 大規模データの解析における問題点 DNAマイクロアレイによる遺伝子発現量の測定を例として
山田陸裕; 上田泰己
蛋白質 核酸 酵素, 01 Aug. 2009 - 正しい知識が捏造を防ぐ データを正確に解釈するための6つのポイント(No.5)大規模データの解析における問題点--DNAマイクロアレイによる遺伝子発現量の測定を例として[含 Q&A]
山田 陸裕; 上田 泰己
蛋白質核酸酵素, Aug. 2009 - CWO negatively regulates circadian transcription with bHLH-ORANGE family genes
Taichi Q. Itoh; Kuniaki Takahashi; Maki Ukai-Tadenuma; Hiroki R. Ueda; Ryu Ueda; Teiichi Tanimura; Akira Matsumoto
JOURNAL OF NEUROGENETICS, 2009 - NEW APPROACH FOR BODY-TIME DETECTION WITH MASS-SPECTROMETRY
Yoichi Minami; Takeya Kasukawa; Yuji Kakazu; Satsuki Ikeda; Sachie Satoh; Masayuki Iigo; Tomoyoshi Soga; Hiroki R. Ueda
JOURNAL OF PHYSIOLOGICAL SCIENCES, 2009 - ライフサイエンス分野 科学技術・研究開発の国際比較 2009年版
菅野純夫; 井ノ上逸朗; 上田泰己; 長田裕之; 小田吉哉; 加藤和人; 黒田真也; 曽我朋義; 服部正平; 武藤香織; 三品昌美; 安藤寿康; 池中一裕; 伊佐正; 磯村宣和; 糸川昌成; 入來篤史; 岩坪威; 臼井支朗; 岡野栄之; 尾崎紀夫; 笠井清登; 狩野方伸; 神谷之康; 北澤茂; 佐倉統; 桜井武; 佐藤浩; 程肇; 銅谷賢治; 鍋倉淳一; 尾藤晴彦; 南部篤; 深谷親; 藤井直敬; 宮川剛; 桃井眞理子; 石田功
ライフサイエンス分野 科学技術・研究開発の国際比較 2009年版, 2009 - メタボローム解析に基づく体内時刻診断法の開発
南陽一; 粕川雄也; 嘉数勇二; 飯郷雅之; 杉本正弘; 池田五月; 曽我朋義; 上田泰己
Program & Abstracts. 6th Congress of Asian Sleep Research Society, 34th Annual Meeting of Japanese Society of Sleep Research, 16th Annual Meeting of Japanese Society for Chronobiology Joint Congress 2009, 2009 - 哺乳類概日時計のシステム生物学
上田泰己
Program & Abstracts. 6th Congress of Asian Sleep Research Society, 34th Annual Meeting of Japanese Society of Sleep Research, 16th Annual Meeting of Japanese Society for Chronobiology Joint Congress 2009, 2009 - Identification of species-specific promoter-associated noncoding RNA in mouse and monkey brains
UESAKA Masahiro; UEDA Hiroki; UNO Ken-ichiro; AGATA Kiyokazu; IMAMURA Takuya
The Journal of Reproduction and Development Supplement, 2009 - 微小管がつかさどる細胞ダイナミクス 平面上において全組織非対称性をどのようにして細胞極性へと関連させるのか(How to connect global tissue asymmetry to cell polarity on the plane)
上村 匡; 春本 敏之; 島田 裕子; 上田 泰己; 小林 徹也
日本生化学会大会・日本分子生物学会年会合同大会講演要旨集, Nov. 2008 - CKIεによるPERIOD2リン酸化反応の温度依存性
中嶋正人; 礒島康史; 石田真弓; 鵜飼(蓼沼)磨貴; 鵜飼英樹; 高尾敏文; 高野敦子; 永井克也; 上田泰己
時間生物学, 20 Oct. 2008 - Singularity behavior of mammalian circadian clock
UKAI Hideki; KOBAYASHI Tetsuya J.; UEDA Hiroki R.
Bioscience & industry, 01 Sep. 2008 - Singularity and phase response of noisy circaidan clocks
小林徹也; 鵜飼英樹; 上田泰己
システム制御情報学会研究発表講演会講演論文集(CD-ROM), 16 May 2008 - 脊椎動物の季節繁殖のシステム生物学
小野ひろ子; 中尾暢宏; 山村崇; 安楽翼; 東久美子; 安尾しのぶ; 加藤泰弘; 影山三朗; 宇野有美子; 粕川雄也; 飯郷雅之; SHARP Peter; 岩澤淳; 鈴木穣; 菅野純夫; 新美輝幸; 水谷誠; 並河鷹夫; 海老原史樹文; 上田泰己; 吉村崇
日本畜産学会大会講演要旨, 27 Mar. 2008 - A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock
Yamada, Rikuhiro; Matsumoto, Akira; Ukai, Maki T.; Houl, Jerry; Uno, Kenichiro; Kasukawa, Takeya; Dauwalder, Brigitte; Itoh, Taichi; Hardin, Paul; Tanimura, Teiichi; Ueda, Hiroki
NEUROSCIENCE RESEARCH, 2008 - 哺乳類概日時計の周期決定因子の探索
礒島康史; 鵜飼英樹; 藤島博史; 山田陸裕; 中嶋正人; 升本宏平; 木内玲子; 南陽一; 木藤良沢; 小島俊男; 榊佳之; 上田泰己
日本人類遺伝学会大会プログラム・抄録集, 2008 - Detection of internal body time based on blood metabolome analysis using CE-TOFMS
Minami Yoichi; Kasukawa Takeya; Ikeda Satsuki; Satoh Sachie; Kakazu Yuji; Masayuki Iigo; Soga Tomoyoshi; Ueda Hiroki
Proceedings of Annual Meeting of the Physiological Society of Japan, 2008 - Singularity and phase response of noisy circadian clocks
Kobayashi Tetsuya; Ukai Hideki; Ueda hiroki
Proceedings of the Annual Conference of the Institute of Systems, Control and Information Engineers, 2008 - Systems Biology of Mammalian Circadian Clocks
Ueda Hiroki
Proceedings of Annual Meeting of the Physiological Society of Japan, 2008 - 生命現象にみられるゆらぎ・振動・波 多細胞時計の脱同期化は哺乳類の概日時計の集団レベルの単独行動の基礎である(Desynchronization of multi-cellular clocks underlies the population-level singularity behavior of mammalian circadian clock)
鵜飼 英樹; 小林 徹也; 上田 泰己
日本発生生物学会・日本細胞生物学会合同大会要旨集, May 2007 - ウズラの季節繁殖を制御する遺伝子の同定
小野ひろ子; 中尾暢宏; 安楽翼; 山村崇; 安尾しのぶ; 高木健; 加藤泰弘; 影山三朗; 東久美子; 粕川雄也; 上田泰己; 海老原史樹文; 吉村崇
日本畜産学会大会講演要旨, 27 Mar. 2007 - Properties of mammalian neural progenitor cells as revealed by genome-wide single cell gene expression profiles
Ayano Kawaguchi; Tomoko Ikawa; Takeya Kasukawa; Hiroki Ueda; Kazuki Kurimoto; Mitinori Saitou; Fumio Matsuzaki
NEUROSCIENCE RESEARCH, 2007 - 脊椎動物の光周性の機能ゲノム的解析II:光周性制御遺伝子の機能解析
小野ひろ子; 中尾暢宏; 山村崇; 安楽翼; 粕川雄也; 飯郷雅之; 岩澤淳; 鈴木穣; 菅野純夫; 海老原史樹文; 上田泰己; 吉村崇
生化学, 2007 - 鳥類の光周性分子機構の解明
中尾暢宏; 小野ひろ子; 山村崇; 安楽翼; 東久美子; 安尾しのぶ; 加藤泰弘; 影山三朗; 宇野有美子; 粕川雄也; 飯郷雅之; SHARP Peter J; 岩澤淳; 鈴木穣; 菅野純夫; 新美輝幸; 水谷誠; 並河鷹夫; 海老原史樹文; 上田泰己; 吉村崇
Annual Meeting of Japanese Avian Endocrinology, 2007 - 脊椎動物の光周性の機能ゲノム的解析I:ゲノムスケールの発現解析
中尾暢宏; 小野ひろ子; 東久美子; 安尾しのぶ; 加藤泰弘; 影山三朗; 宇野有美子; 粕川雄也; 飯郷雅之; SHARP Peter J; 水谷誠; 並河鷹夫; 海老原史樹文; 上田泰己; 吉村崇
生化学, 2007 - 鳥類の光周性関連遺伝子の発現解析
小野ひろ子; 中尾暢宏; 安楽翼; 山村崇; 安尾しのぶ; 高木健; 加藤泰弘; 影山三朗; 宇野有美子; 東久美子; 粕川雄也; 上田泰己; 海老原史樹文; 吉村崇
時間生物学, 31 Oct. 2006 - DNAマイクロアレーを用いた成長板軟骨における概日リズム遺伝子の解析
本田清昌; 河本健; 山田陸裕; 上田泰己; 中島歩; 上嶋太一; 能城光秀; 藤本勝巳; 小島知子; 橋本誠一; 加藤幸夫
時間生物学, 31 Oct. 2006 - ほ乳類プロモーター/エンハンサーデータベースを用いた遺伝子ネットワーク解析
熊木勇一; 鵜飼(たで沼; 磨貴; 宇野健一郎; 西尾純子; 鵜飼英樹; 山田陸裕; 小森隆; 重吉康史; 上田泰己
日本分子生物学会年会講演要旨集, 25 Nov. 2005 - Dnmt1/Dnmt3a/Dnmt3bトリプルノックアウトES細胞の解析
津村明子; 早川智博; 熊木勇一; 竹林慎一郎; 阪上守人; 松岡智沙; 下遠野邦忠; 石川冬木; LI En; 上田泰己; 中山潤一; 岡野正樹
日本分子生物学会年会講演要旨集, 25 Nov. 2005 - 軟骨分化の概日リズム:網羅的解析
本田清昌; 河本健; 山田陸裕; 上田泰己; 能城光秀; 藤本勝巳; 中島歩; 西村正宏; 尾田良; 中村茂夫; 小島知子; 橋本誠一; 加藤幸夫
日本分子生物学会年会講演要旨集, 25 Nov. 2005 - 体内時計の転写制御ネットワークの同定 (第23回 バイオテクノロジー シンポジウム 予稿集) -- (ポスターセッションの部 細胞内ネットワークのダイナミズム解析技術開発)
上田 泰己; 林 聡子; 浦田 ひろみ
バイオテクノロジ-シンポジウム予稿集, 22 Nov. 2005 - 遺伝子発現ネットワークのダイナミクス : Rich-Travel-More
上田 泰己
人工知能学会誌 = Journal of Japanese Society for Artificial Intelligence, 01 May 2005 - Systems Biology on Gene Expression Dynamics Conserved from E. coli to Human(
Emergent Intelligence on Networks)
UEDA Hiroki R.; Hiroki Ueda
Journal of Japanese Society for Artificial Intelligence, 01 May 2005 - 幹細胞 4 成長板における遺伝子発現の概日リズム:網羅的解析
本田清昌; 河本健; 上田泰己; 能城光秀; 藤本勝巳; 西村正宏; 尾田良; 中村茂夫; 橋本誠一
日本軟骨代謝学会プログラム・抄録集, 2005 - 分子時刻表を用いた体内時刻測定法及びリズム障害診断法の開発 (第22回バイオテクノロジーシンポジウム予稿集) -- (ポスターセッションの部 細胞内ネットワークのダイナミズム解析技術開発)
上田 泰己; 南 陽一; 天貝 裕地
バイオテクノロジ-シンポジウム予稿集, 04 Nov. 2004 - Systems Biology on Complex and Dynamic Biological Phenomena
上田 泰己
Journal of oral biosciences, 01 Sep. 2004 - 細胞内ネットワークのダイナミズム解析技術開発 4‐7 セミインタクト細胞系を用いたタンパク質ネットワーク可視化解析技術の開発
村田昌之; 加納ふみ; 佐甲靖志; 天貝裕地; 上田泰己; 松下智子; 林聡子; 南陽一; 山内妙子
バイオテクノロジーシンポジウム予稿集, 11 Nov. 2003 - B105 不妊虫放飼法の効率を左右する時計遺伝子(防除法・害虫管理・IPM)
宮竹 貴久; 松山 隆志; 松本 顕; 谷村 禎一; 上田 泰己; 豊里 哲也
日本応用動物昆虫学会大会講演要旨, 01 Mar. 2003 - Underlying Principles in Transcriptional Dynamics from E. coli to Man
Ueda H.R.; Hayashi S.; Matsuyama S.; Yomo T.; Hashimoto S.; Kay S.A.; Hogenesch J.B.; Iino M.
Seibutsu Butsuri, 2003 - A systems-biological approach in drug discovery for circadian rhythm disorders
UEDA Hiroki R.
Folia pharmacologica Japonica, 10 Nov. 2002 - ゲノムインフォマティクス技術 システムバイオロジーによる概日時計の分子機構の解明
上田泰己; 高杉智弘; 陳文彬; 若松永憲; 林聡子; 浦田ひろみ; 小島知子; 片倉冬絵; 橋本誠一
バイオテクノロジーシンポジウム予稿集, 05 Nov. 2002 - サーカディアンリズムのシミュレーションと実証研究
上田泰己; 高杉智弘; 岩瀬秀; 若松永憲; 河村美穂; 伊藤静香; 林聡子; 土川美保; 橋本誠一
バイオテクノロジーシンポジウム予稿集, 31 Oct. 2001 - Circadian RhythmのSimulation研究 位相変位を惹起する薬物の作用点予測と検証
上田泰己; 高杉智弘; 陳文彬; 堀口達矢; 小野木博; 根本靖久; 橋本誠一
バイオテクノロジーシンポジウム予稿集, 28 Sep. 2000 - ゲノムインフォマティクスのためのDual Research Engine Systemの構築
中山広樹; 高杉智弘; 上田泰己; 水野貴之; 勝利恵子; 橋本誠一
バイオテクノロジーシンポジウム予稿集, 12 Nov. 1999
- Designing the mammalian biological oscillators
Grant-in-Aid for Scientific Research (S)
The University of Tokyo
11 Jun. 2018 - 31 Mar. 2023 - Understanding the design principle of circadian oscillator in mammals through reconstitution
Grant-in-Aid for Scientific Research (S)
The University of Tokyo
31 May 2013 - 31 Mar. 2018 - Proteome analysis for low abundant ptoteins
Grant-in-Aid for Challenging Exploratory Research
Institute of Physical and Chemical Research
01 Apr. 2015 - 31 Mar. 2017 - Small-number issues in biological rhythms: regulation of oscillation system with low-abundant proteins through tuning turnover rate
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
01 Apr. 2011 - 31 Mar. 2016 - Spying minority in biological phenomena -Toward bridging dynamics between individual and ensemble processes-
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
Osaka University
01 Apr. 2011 - 31 Mar. 2016 - System-level Understanding of Intercellular Interactions
Grant-in-Aid for Scientific Research on Priority Areas
The Institute of Physical and Chemical Research
2006 - 2009