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Ogura Yoshitoshi
Division of Basic infectious Department of Infectious Medicine
Professor
Career
■ Career
- Jun. 2020 - Present
Division of Microbiology, Department of Infectious Medicine, Kurume University School of Medicine, 教授, Professor - Apr. 2015 - May 2020
Kyushu university, Department of Bacteriology Faculty of Medical Sciences, Associate Professor - Apr. 2007 - Mar. 2015
University of Miyazaki, Faculty of Medicine, 助教 - Apr. 2003 - Mar. 2007
University of Miyazaki, Faculty of Medicine, 助手
- Apr. 1999 - Mar. 2002, Nara Institute of Science and Technology, Graduate School of Biological Sciences, 細胞生物学 博士後期課程
- Jan. 2024 - Present
理事, 日本細菌学会 - Jan. 2024 - Present
評議委員, 日本ゲノム微生物学会 - 2023 - Present
運営委員, 腸管出血性大腸菌シンポジウム - Jan. 2021 - Dec. 2023
理事, 日本細菌学会 - 2018 - Dec. 2020
評議員, 日本ゲノム微生物学会 - Jan. 2018 - Dec. 2019
運営委員会委員, トキシンシンポジウム - Jan. 2015 - Dec. 2017
評議員, 日本ゲノム微生物学会 - Jan. 2015 - Dec. 2017
シンポジウム企画調整委員, 日本細菌学会 - Jan. 2012 - Dec. 2014
シンポジウム企画調整委員会委員, 日本細菌学会 - Jan. 2009 - Dec. 2012
若手の会 世話人, 日本ゲノム微生物学会 - Jan. 2009 - Dec. 2011
広報委員会委員, 日本細菌学会
Research activity information
■ Award
■ 関心を持って取組んでいる活動
- Oct. 2015
宮崎大学, 宮崎大学ハイステップ研究者表彰
小椋 義俊 - Jul. 2014
平成26年度腸管出血性大腸菌感染症研究会奨励賞
Japan - Sep. 2011
日本細菌学会平成23年黒屋奨学賞
Japan
- Comprehensive serotyping of Mannheimia haemolytica by a PCR system using the diversity of capsule biosynthesis genes.
Atsushi Iguchi; Yuichi Ueno; Kaori Hoshinoo; Miki Okuno; Ryoko Uemura; Garam You; Yoshitoshi Ogura; Daisuke Takamatsu
Scientific reports, 08 Apr. 2025 - Whole-genome-based characterization of Escherichia albertii strains isolated from paediatric diarrhoeal cases in Kolkata, India.
Goutam Chowdhury; Yuki Hoshiko; Miki Okuno; Kei Kitahara; M John Albert; Shin-Ichi Miyoshi; Yoshitoshi Ogura; Shanta Dutta; Thandavarayan Ramamurthy; Asish K Mukhopadhyay
Microbial genomics, Apr. 2025 - Genetic diversity of dissolved free extracellular DNA compared to intracellular DNA in wastewater treatment plants.
Soichiro Tamai; Miki Okuno; Yoshitoshi Ogura; Yoshihiro Suzuki
The Science of the total environment, 20 Mar. 2025 - Mycoplasma pneumoniae drives macrophage lipid uptake via GlpD-mediated oxidation, facilitating foam cell formation.
Takeshi Yamamoto; Miki Okuno; Koichi Kuwano; Yoshitoshi Ogura
International journal of medical microbiology : IJMM, 17 Jan. 2025 - Genome Analysis of Japanese Yersinia pseudotuberculosis Strains Isolated From Kawasaki Disease Patients and Other Sources and Their Phylogenetic Positions in the Global Y. pseudotuberculosis Population.
Kazuaki Yasuoka; Yasuhiro Gotoh; Itsuki Taniguchi; Debora Satie Nagano; Keiji Nakamura; Yumi Mizuno; Tomoko Abe; Yoshitoshi Ogura; Hiroshi Nakajima; Masayoshi Uesugi; Masaru Miura; Kazuko Seto; Yuki Wakabayashi; Junko Isobe; Takashi Watari; Sonoko Senda; Noboru Hayakawa; Eiki Ogawa; Toshio Sato; Etsuro Nanishi; Yasunari Sakai; Atsushi Kato; Ippei Miyata; Kazunobu Ouchi; Shouichi Ohga; Toshiro Hara; Tetsuya Hayashi
Microbiology and immunology, 09 Jan. 2025 - Bile acid is a responsible host factor for high-fat diet-induced gut microbiota alterations in rats: proof of the "bile acid hypothesis".
Masamichi Watanabe; Yuki Fujita; Masahito Hagio; Satoshi Ishizuka; Yoshitoshi Ogura; Tetsuya Hayashi; Satoru Fukiya; Atsushi Yokota
Bioscience of microbiota, food and health, 2025 - Relationship Between Fluoroquinolone Resistance and Mutations in the Quinolone Resistance-Determining Region in Corynebacterium macginleyi
Nobuhiro Kato; Masatoshi Haruta; Rikki Arai; Kazunori Sato; Kei Furushima; Kanako Yokomizo; Miki Okuno; Takeshi Yamamoto; Yoshitoshi Ogura; Shigeo Yoshida
Investigative Ophthalmology & Visual Science, 26 Sep. 2024 - Year-round monitoring of antibiotic-resistant bacteria in pristine uppermost stream and estimation of pollution sources
Emi Nishimura; Hui Xie; Soichiro Tamai; Masateru Nishiyama; Kei Nukazawa; Yuki Hoshiko; Yoshitoshi Ogura; Yoshihiro Suzuki
FRONTIERS IN ENVIRONMENTAL SCIENCE, 09 Sep. 2024 - Streptococcus suis subsp. hashimotonensis subsp. nov.: Lancefield group A antigen-positive organisms isolated from human clinical specimens and wild boar oral cavity samples.
Yuki Hasegawa; Toyokazu Akita; Tomokazu Kuchibiro; Tohru Miyoshi-Akiyama; Junko Tomida; Ryo Kutsuna; Ryota Mori; Miki Okuno; Yoshitoshi Ogura; Yoshiaki Kawamura
Systematic and applied microbiology, 11 Jul. 2024 - Improved complete genome sequence of Bdellovibrio bacteriovorus 109J, a widely studied laboratory strain of predatory bacteria.
Yuki Hoshiko; Miki Okuno; Takeshi Yamamoto; Toshinari Maeda; Yoshitoshi Ogura
Microbiology resource announcements, 07 Jun. 2024 - Isolation and whole-genome sequencing analysis of Escherichia fergusonii harboring a heat-labile enterotoxin gene from retail chicken meat in Okinawa, Japan.
Tetsuya Kakita; Kenichi Lee; Masatomo Morita; Miki Okuno; Hisako Kyan; Sho Okano; Noriyuki Maeshiro; Momoko Ishizu; Tsuyoshi Kudeken; Haruno Taira; Morimi Teruya; Yoshitoshi Ogura; Yukihiro Akeda; Makoto Ohnishi
Microbiology and immunology, Mar. 2024 - Development of an improved colonization system for human-derived Bifidobacterium longum subsp. longum in conventional mice through the feeding of raffinose or 1-kestose.
Mina Shimada; Youhei Kawase; Kei Sonoyama; Yoshitoshi Ogura; Tetsuya Hayashi; Atsushi Yokota; Satoru Fukiya
Bioscience of microbiota, food and health, 2024 - Complete genome sequences of 11 Streptococcus pneumoniae strains isolated from acute infectious purpura fulminans, sepsis, and pneumonia.
Takane Kikuchi-Ueda; Shintaro Maeno; Yasuhiro Gotoh; Yoshitoshi Ogura; Ryuichi Fujisaki; Tetsuya Hayashi
Microbiology resource announcements, 22 Dec. 2023 - Isolation and Genomic Characterization of a Heat-Labile Enterotoxin 1-Producing Escherichia fergusonii Strain from a Human.
Miki Okuno; Nami Tsuru; Shuji Yoshino; Yasuhiro Gotoh; Takeshi Yamamoto; Tetsuya Hayashi; Yoshitoshi Ogura
Microbiology spectrum, 17 Aug. 2023 - HlyF, an underestimated virulence factor of uropathogenic Escherichia coli.
Camille V Chagneau; Delphine Payros; Audrey Goman; Cécile Goursat; Laure David; Miki Okuno; Pierre-Jean Bordignon; Carine Séguy; Clémence Massip; Priscilla Branchu; Yoshitoshi Ogura; Jean-Philippe Nougayrède; Marc Marenda; Eric Oswald
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 31 Jul. 2023 - Highly sensitive detection and quantification of dissolved free extracellular DNA using colloid adsorption and foam concentration
Soichiro Tamai; Yoshitoshi Ogura; Miki Okuno; Kei Nukazawa; Yoshihiro Suzuki
ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY, 29 Jun. 2023 - Molecular characterization of
SrSTP14 , a sugar transporter from thermogenic skunk cabbage, and its possible role in developing pollen
Daiki Koyamatsu; Miyabi Otsubo; Tomonori Ohira; Mitsuhiko P. Sato; Hiromi Suzuki‐Masuko; Takuya Shiota; Kohei Takenaka Takano; Masaaki Ozeki; Koichi Otsuka; Yoshitoshi Ogura; Tetsuya Hayashi; Masao Watanabe; Takehito Inaba; Yasuko Ito‐Inaba
Physiologia Plantarum, 20 Jun. 2023 - Fission yeast Srr1 and Skb1 promote isochromosome formation at the centromere
Piyusha Mongia; Naoko Toyofuku; Ziyi Pan; Ran Xu; Yakumo Kinoshita; Keitaro Oki; Hiroki Takahashi; Yoshitoshi Ogura; Tetsuya Hayashi; Takuro Nakagawa
Communications Biology, 26 May 2023, [Reviewed] - Escherichia cryptic clade I is an emerging source of human intestinal pathogens
Miki Okuno; Yoko Arimizu; Seina Miyahara; Yuki Wakabayashi; Yasuhiro Gotoh; Shuji Yoshino; Tetsuya Harada; Kazuko Seto; Takeshi Yamamoto; Keiji Nakamura; Tetsuya Hayashi; Yoshitoshi Ogura
BMC Biology, 13 Apr. 2023 - Genomic characterization of endemic diarrheagenic Escherichia coli and Escherichia albertii from infants with diarrhea in Vietnam.
Atsushi Iguchi; Taichiro Takemura; Yoshitoshi Ogura; Thi Thu Huong Nguyen; Taisei Kikuchi; Miki Okuno; Asako Tokizawa; Hanako Iwashita; Hong Quynh Anh Pham; Thi Hang Doan; Na Ly Tran; Thi Luong Tran; Thi Hang Nguyen; Thi Hien Tran; Tuyet Ngoc Linh Pham; Trung Duc Dao; Thi My Hanh Vu; Thi Nga Nguyen; Hieu Vu; Van Trang Nguyen; Thi Thu Huong Vu; Thanh Huong Le; Tuan Anh Lai; Tuan Cuong Ngo; Futoshi Hasebe; Dong Tu Nguyen; Tetsu Yamashiro
PLoS neglected tropical diseases, Apr. 2023 - Global population structure, genomic diversity and carbohydrate fermentation characteristics of clonal complex 119 (CC119), an understudied Shiga toxin-producing E. coli (STEC) lineage including O165:H25 and O172:H25
Kaiji Nakamura; Kazuko Seto; Kenichi Lee; Tadasuke Ooka; Yasuhiro Gotoh; Itsuki Taniguchi; Yoshitoshi Ogura; Jacques Georges Mainil; Denis Piérard; Tetsuya Harada; Yoshiki Etoh; Saori Ueda; Mitsuhiro Hamasaki; Junko Isobe; Keiko Kimata; Hiroshi Narimatsu; Jun Yatsuyanagi; Makoto Ohnishi; Sunao Iyoda; Tetsuya Hayashi
Microbial Genomics, 23 Mar. 2023, [Reviewed] - Nationwide analysis of antimicrobial resistance in pathogenic Escherichia coli strains isolated from diseased swine over 29 years in Japan
Masahiro Kusumoto; Yukino Tamamura-Andoh; Yuna Hikoda-Kogiku; Asami Magome; Erina Okuhama; Keisuke Sato; Yoshino Mizuno; Nobuo Arai; Ayako Watanabe-Yanai; Taketoshi Iwata; Yoshitoshi Ogura; Yasuhiro Gotoh; Keiji Nakamura; Tetsuya Hayashi; Masato Akiba
Frontiers in Microbiology, 17 Mar. 2023 - Helicobacter kumamotonensis sp. nov., isolated from human clinical specimens
Yoshiaki Kawamura; Yuko Fujimoto; Ryo Kutsuna; Junko Tomida; Kei-ichi Yamamoto; Tohru Miyoshi-Akiyama; Miki Okuno; Yoshitoshi Ogura; Masao Matsuoka; Tatusya Kawaguchi; Hiroyasu Tsutsuki; Tomohiro Sawa
International Journal of Systematic and Evolutionary Microbiology, 15 Mar. 2023 - Alteration of a Shiga toxin-encoding phage associated with a change in toxin production level and disease severity in Escherichia coli.
Tatsuya Miyata; Itsuki Taniguchi; Keiji Nakamura; Yasuhiro Gotoh; Dai Yoshimura; Takehiko Itoh; Shinichiro Hirai; Eiji Yokoyama; Makoto Ohnishi; Sunao Iyoda; Yoshitoshi Ogura; Tetsuya Hayashi
Microbial genomics, Feb. 2023 - A Salmonella enterica Serovar Oranienburg Clone Caused a Cluster of Bacteremia Cases in Persons With No Recognizable Underlying Diseases in Japan.
Tadasuke Ooka; Yasuhiro Gotoh; Shigeki Hatanaka; Miyuki Yoshimori; Kazutaka Nishitarumizu; Kanami Kojo; Hiroki Kosakamoto; Koji Sameshima; Yoichi Kuroki; Naomi Chibana; Yuriko Doi; Shuji Yoshino; Tetsuya Harada; Kazuko Seto; Tetsuya Ikeda; Hiroaki Miyanohara; Koichiro Nakayama; Mutsuyo Gokuden; Naoko Imuta; Hideki Kawamura; Yoshitoshi Ogura; Tetsuya Hayashi; Junichiro Nishi
Open forum infectious diseases, Jan. 2023 - Helicobacter cinaedi is a human-adapted lineage in the Helicobacter cinaedi/canicola/'magdeburgensis' complex.
Yasuhiro Gotoh; Yuya Atsuta; Takako Taniguchi; Ruriko Nishida; Keiji Nakamura; Yoshitoshi Ogura; Naoaki Misawa; Tetsuya Hayashi
Microbial genomics, May 2022 - Global population structure of the Serratia marcescens complex and identification of hospital-adapted lineages in the complex
Tomoyuki Ono; Itsuki Taniguchi; Keiji Nakamura; Debora Satie Nagano; Ruriko Nishida; Yasuhiro Gotoh; Yoshitoshi Ogura; Mitsuhiko P. Sato; Atsushi Iguchi; Kazunori Murase; Dai Yoshimura; Takehiko Itoh; Ayaka Shima; Damien Dubois; Eric Oswald; Akira Shiose; Naomasa Gotoh; Tetsuya Hayashi
Microbial Genomics, 22 Mar. 2022 - Antibiotic-resistant Escherichia coli isolated from dairy cows and their surrounding environment on a livestock farm practicing prudent antimicrobial use
Yoshihiro Suzuki; Hayate Hiroki; Hui Xie; Masateru Nishiyama; Shinsuke H. Sakamoto; Ryoko Uemura; Kei Nukazawa; Yoshitoshi Ogura; Toru Watanabe; Ikuo Kobayashi
INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH, Mar. 2022 - MetaPlatanus: a metagenome assembler that combines long-range sequence links and species-specific features.
Rei Kajitani; Hideki Noguchi; Yasuhiro Gotoh; Yoshitoshi Ogura; Dai Yoshimura; Miki Okuno; Atsushi Toyoda; Tomomi Kuwahara; Tetsuya Hayashi; Takehiko Itoh
Nucleic acids research, 16 Dec. 2021 - The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H19.
Ruriko Nishida; Keiji Nakamura; Itsuki Taniguchi; Kazunori Murase; Tadasuke Ooka; Yoshitoshi Ogura; Yasuhiro Gotoh; Takehiko Itoh; Atsushi Toyoda; Jacques Georges Mainil; Denis Piérard; Kazuko Seto; Tetsuya Harada; Junko Isobe; Keiko Kimata; Yoshiki Etoh; Mitsuhiro Hamasaki; Hiroshi Narimatsu; Jun Yatsuyanagi; Mitsuhiro Kameyama; Yuko Matsumoto; Yuhki Nagai; Jun Kawase; Eiji Yokoyama; Kazuhiko Ishikawa; Takayuki Shiomoto; Kenichi Lee; Dongchon Kang; Koichi Akashi; Makoto Ohnishi; Sunao Iyoda; Tetsuya Hayashi
Microbial genomics, Dec. 2021 - A bacterial small RNA regulates the adaptation of Helicobacter pylori to the host environment
Ryo Kinoshita-Daitoku; Kotaro Kiga; Masatoshi Miyakoshi; Ryota Otsubo; Yoshitoshi Ogura; Takahito Sanada; Zhu Bo; Tuan Vo Phuoc; Tokuju Okano; Tamako Iida; Rui Yokomori; Eisuke Kuroda; Sayaka Hirukawa; Mototsugu Tanaka; Arpana Sood; Phawinee Subsomwong; Hiroshi Ashida; Tran Thanh Binh; Lam Tung Nguyen; Khien Vu Van; Dang Quy Dung Ho; Kenta Nakai; Toshihiko Suzuki; Yoshio Yamaoka; Tetsuya Hayashi; Hitomi Mimuro
Nature Communications, Dec. 2021 - Genome-wide association study of gastric cancer- and duodenal ulcer-derived Helicobacter pylori strains reveals discriminatory genetic variations and novel oncoprotein candidates.
Vo Phuoc Tuan; Koji Yahara; Ho Dang Quy Dung; Tran Thanh Binh; Pham Huu Tung; Tran Dinh Tri; Ngo Phuong Minh Thuan; Vu Van Khien; Tran Thi Huyen Trang; Bui Hoang Phuc; Evariste Tshibangu-Kabamba; Takashi Matsumoto; Junko Akada; Rumiko Suzuki; Tadayoshi Okimoto; Masaaki Kodama; Kazunari Murakami; Hirokazu Yano; Masaki Fukuyo; Noriko Takahashi; Mototsugu Kato; Shin Nishiumi; Takashi Azuma; Yoshitoshi Ogura; Tetsuya Hayashi; Atsushi Toyoda; Ichizo Kobayashi; Yoshio Yamaoka
Microbial genomics, Nov. 2021 - Comparative Genomic and Physiological Analysis against Clostridium scindens Reveals Eubacterium sp. c-25 as an Atypical Deoxycholic Acid Producer of the Human Gut Microbiota.
Isaiah Song; Yasuhiro Gotoh; Yoshitoshi Ogura; Tetsuya Hayashi; Satoru Fukiya; Atsushi Yokota
Microorganisms, 29 Oct. 2021 - Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species
Ola Alessa; Yoshitoshi Ogura; Yoshiko Fujitani; Hideto Takami; Tetsuya Hayashi; Nurettin Sahin; Akio Tani
FRONTIERS IN MICROBIOLOGY, Oct. 2021 - Unexpected genomic features of high current density-producing Geobacter sulfurreducens strain YM18.
Takashi Fujikawa; Yoshitoshi Ogura; Koki Ishigami; Yoshihiro Kawano; Miyuki Nagamine; Tetsuya Hayashi; Kengo Inoue
FEMS microbiology letters, 09 Sep. 2021 - Complete Genome Sequence of High Current-Producing Geobacter sulfurreducens Strain YM35, Isolated from River Sediment in Japan.
Takashi Fujikawa; Yoshitoshi Ogura; Tetsuya Hayashi; Kengo Inoue
Microbiology resource announcements, 19 Aug. 2021 - Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-Associated Proteins in Arabidopsis.
Yoshihiro Hirosawa; Akari Tada; Takakazu Matsuura; Izumi C Mori; Yoshitoshi Ogura; Tetsuya Hayashi; Susumu Uehara; Yasuko Ito-Inaba; Takehito Inaba
Plant & cell physiology, 19 Aug. 2021 - Development of a homogeneous time-resolved FRET (HTRF) assay for the quantification of Shiga toxin 2 produced by E. coli
Keiji Nakamura; Chikashi Tokuda; Hideyuki Arimitsu; Yoshiki Etoh; Mitsuhiro Hamasaki; Yuichiro Deguchi; Itsuki Taniguchi; Yasuhiro Gotoh; Yoshitoshi Ogura; Tetsuya Hayashi
PeerJ, 28 Jul. 2021 - A human respiratory tract-associated bacterium with an extremely small genome.
Kazumasa Fukuda; Kei Yamasaki; Yoshitoshi Ogura; Toshinori Kawanami; Hiroaki Ikegami; Shingo Noguchi; Kentarou Akata; Keisuke Katsura; Kazuhiro Yatera; Hiroshi Mukae; Tetsuya Hayashi; Hatsumi Taniguchi
Communications biology, 26 May 2021 - Insights into the acquisition of the pks island and production of colibactin in the Escherichia coli population
Frédéric Auvray; Alexandre Perrat; Yoko Arimizu; Camille V. Chagneau; Nadège Bossuet-Greif; Clémence Massip; Hubert Brugère; Jean-Philippe Nougayrède; Tetsuya Hayashi; Priscilla Branchu; Yoshitoshi Ogura; Eric Oswald
Microbial genomics, 01 May 2021 - The evolution of hard tick-borne relapsing fever borreliae is correlated with vector species rather than geographical distance
Ranna Nakao; Kentaro Kasama; Bazartseren Boldbaatar; Yoshitoshi Ogura; Hiroki Kawabata; Atsushi Toyoda; Tetsuya Hayashi; Ai Takano; Ken Maeda
BMC ECOLOGY AND EVOLUTION, May 2021 - Prophages integrating into prophages: A mechanism to accumulate type III secretion effector genes and duplicate Shiga toxin-encoding prophages in Escherichia coli
Keiji Nakamura; Yoshitoshi Ogura; Yasuhiro Gotoh; Tetsuya Hayashi
PLOS Pathogens, 29 Apr. 2021 - Diversification of Escherichia albertii H-Antigens and Development of H-Genotyping PCR.
Koji Nakae; Tadasuke Ooka; Koichi Murakami; Yukiko Hara-Kudo; Naoko Imuta; Yasuhiro Gotoh; Yoshitoshi Ogura; Tetsuya Hayashi; Yasuhiro Okamoto; Junichiro Nishi
Frontiers in microbiology, 2021 - Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species.
Ola Alessa; Yoshitoshi Ogura; Yoshiko Fujitani; Hideto Takami; Tetsuya Hayashi; Nurettin Sahin; Akio Tani
Frontiers in microbiology, 2021 - The level of antimicrobial resistance of sewage isolates is higher than that of river isolates in different Escherichia coli lineages
Yoshitoshi Ogura; Takuya Ueda; Kei Nukazawa; Hayate Hiroki; Hui Xie; Yoko Arimizu; Tetsuya Hayashi; Yoshihiro Suzuki
Scientific Reports, 01 Dec. 2020 - 12α-Hydroxylated bile acid induces hepatic steatosis with dysbiosis in rats
Ja Young Lee; Hidehisa Shimizu; Masahito Hagio; Satoru Fukiya; Masamichi Watanabe; Yasutake Tanaka; Ga Hyun Joe; Hitoshi Iwaya; Reika Yoshitsugu; Keidai Kikuchi; Misaki Tsuji; Nanako Baba; Takuma Nose; Koji Tada; Taketo Hanai; Shota Hori; Akari Takeuchi; Yumiko Furukawa; Bungo Shirouchi; Masao Sato; Tadasuke Ooka; Yoshitoshi Ogura; Tetsuya Hayashi; Atsushi Yokota; Satoshi Ishizuka
Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids, Dec. 2020 - A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-Pacific.
Naohisa Wada; Hideaki Yuasa; Rei Kajitani; Yasuhiro Gotoh; Yoshitoshi Ogura; Dai Yoshimura; Atsushi Toyoda; Sen-Lin Tang; Yukihiro Higashimura; Hugh Sweatman; Zac Forsman; Omri Bronstein; Gal Eyal; Nalinee Thongtham; Takehiko Itoh; Tetsuya Hayashi; Nina Yasuda
Microbiome, 24 Aug. 2020 - Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error-removal process.
Rei Kajitani; Dai Yoshimura; Yoshitoshi Ogura; Yasuhiro Gotoh; Tetsuya Hayashi; Takehiko Itoh
DNA research : an international journal for rapid publication of reports on genes and genomes, 01 Jun. 2020 - Genomic characterization of closely related species in the Rumoiensis clade infers ecogenomic signatures to non-marine environments.
Mami Tanaka; Daiki Kumakura; Sayaka Mino; Hidetaka Doi; Yoshitoshi Ogura; Tetsuya Hayashi; Isao Yumoto; Man Cai; Yu-Guang Zhou; Bruno Gomez-Gil; Toshiyoshi Araki; Tomoo Sawabe
Environmental microbiology, 07 May 2020, [Reviewed] - Mutational diversity in mutY deficient Helicobacter pylori and its effect on adaptation to the gastric environment.
Ryo Kinoshita-Daitoku; Kotaro Kiga; Takahito Sanada; Yoshitoshi Ogura; Zhu Bo; Tamako Iida; Rui Yokomori; Eisuke Kuroda; Mototsugu Tanaka; Arpana Sood; Toshihiko Suzuki; Kenta Nakai; Tetsuya Hayashi; Hitomi Mimuro
Biochemical and biophysical research communications, 07 May 2020, [Reviewed] - Complete Genome Sequence of Helicobacter pylori Strain ATCC 43504, a Type Strain That Can Infect Gerbils.
Ryo Kinoshita-Daitoku; Yoshitoshi Ogura; Kotaro Kiga; Fumito Maruyama; Tomoyo Kondo; Ichiro Nakagawa; Tetsuya Hayashi; Hitomi Mimuro
Microbiology resource announcements, 30 Apr. 2020, [Reviewed] - Non-pathogenic Escherichia coli acquires virulence by mutating a growth-essential LPS transporter.
Chikara Kaito; Hirono Yoshikai; Ai Wakamatsu; Atsushi Miyashita; Yasuhiko Matsumoto; Tomoko Fujiyuki; Masaru Kato; Yoshitoshi Ogura; Tetsuya Hayashi; Takao Isogai; Kazuhisa Sekimizu
PLoS pathogens, Apr. 2020, [Reviewed] - Hypoosmotic stress induces flagellar biosynthesis and swimming motility in Escherichia albertii.
Tetsuya Ikeda; Toshie Shinagawa; Takuya Ito; Yuta Ohno; Akiko Kubo; Junichiro Nishi; Yasuhiro Gotoh; Yoshitoshi Ogura; Tadasuke Ooka; Tetsuya Hayashi
Communications biology, 28 Feb. 2020, [Reviewed] - Group A Streptococcus establishes pharynx infection by degrading the deoxyribonucleic acid of neutrophil extracellular traps.
Mototsugu Tanaka; Ryo Kinoshita-Daitoku; Kotaro Kiga; Takahito Sanada; Bo Zhu; Tokuju Okano; Chihiro Aikawa; Tamako Iida; Yoshitoshi Ogura; Tetsuya Hayashi; Koshu Okubo; Miho Kurosawa; Junichi Hirahashi; Toshihiko Suzuki; Ichiro Nakagawa; Masaomi Nangaku; Hitomi Mimuro
Scientific reports, 24 Feb. 2020, [Reviewed] - Functional traits of particle-associated microbial assemblages in the low-latitude Pacific Ocean
Hideto Takami; Yuya Tada; Takashi Okubo; Wataru Arai; Yoshitoshi Ogura; Tetsuya Hayashi; Shotaro Suzuki; Koji Hamasaki
22 Jan. 2020 - Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28.
Keiji Nakamura; Kazunori Murase; Mitsuhiko P Sato; Atsushi Toyoda; Takehiko Itoh; Jacques Georges Mainil; Denis Piérard; Shuji Yoshino; Keiko Kimata; Junko Isobe; Kazuko Seto; Yoshiki Etoh; Hiroshi Narimatsu; Shioko Saito; Jun Yatsuyanagi; Kenichi Lee; Sunao Iyoda; Makoto Ohnishi; Tadasuke Ooka; Yasuhiro Gotoh; Yoshitoshi Ogura; Tetsuya Hayashi
Microbial genomics, Jan. 2020, [Reviewed] - Escherichia coli O8:H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea.
Kai Ishimaru; Mari Sasaki; Hiroshi Narimatsu; Yoko Arimizu; Yasuhiro Gotoh; Keiji Nakamura; Tetsuya Hayashi; Yoshitoshi Ogura
Open forum infectious diseases, Jan. 2020, [Reviewed] - A highly efficient method for concentrating DNA from river water by combined coagulation and foam separation
Yoshihiro Suzuki; Yuki Imafuku; Masateru Nishiyama; Kotaro Teranishi; Atsushi Jikumaru; Kei Nukazawa; Yoshitoshi Ogura
SEPARATION SCIENCE AND TECHNOLOGY, Dec. 2019 - Genotypic diversity of Streptococcus suis and the S. suis-like bacterium Streptococcus ruminantium in ruminants.
Okura M; Maruyama F; Ota A; Tanaka T; Matoba Y; Osawa A; Sadaat SM; Osaki M; Toyoda A; Ogura Y; Hayashi T; Takamatsu D
Veterinary research, Nov. 2019, [Reviewed] - O-antigen biosynthesis gene clusters of Escherichia albertii: their diversity and similarity to Escherichia coli gene clusters and the development of an O-genotyping method.
Tadasuke Ooka; Kazuko Seto; Yoshitoshi Ogura; Keiji Nakamura; Atsushi Iguchi; Yasuhiro Gotoh; Mikiko Honda; Yoshiki Etoh; Tetsuya Ikeda; Wakana Sugitani; Takayuki Konno; Kimiko Kawano; Naoko Imuta; Kiyotaka Yoshiie; Yukiko Hara-Kudo; Koichi Murakami; Tetsuya Hayashi; Junichiro Nishi
Microbial genomics, Nov. 2019, [Reviewed] - Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes
Mitsuhiko P Sato; Yoshitoshi Ogura; Keiji Nakamura; Ruriko Nishida; Yasuhiro Gotoh; Masahiro Hayashi; Junzo Hisatsune; Motoyuki Sugai; Itoh Takehiko; Tetsuya Hayashi
DNA Research, 01 Oct. 2019, [Reviewed] - Arsenate and microbial dynamics in different phosphorus regimes of the subtropical Pacific Ocean
Hashihama Fuminori; Suwa Shuhei; Kanda Jota; Ehama Makoto; Sakuraba Ryousuke; Kinouchi Shinko; Sato Mitsuhide; Yamaguchi Tamaha; Saito Hiroaki; Ogura Yoshitoshi; Hayashi Tetsuya; Mori Hiroshi; Kurokawa Ken; Suzuki Shotaro; Hamasaki Koji
PROGRESS IN OCEANOGRAPHY, Sep. 2019, [Reviewed] - Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains.
Yoko Arimizu; Yumi Kirino; Mitsuhiko P Sato; Koichi Uno; Toshio Sato; Yasuhiro Gotoh; Frédéric Auvray; Hubert Brugere; Eric Oswald; Jacques G Mainil; Kelly S Anklam; Dörte Döpfer; Shuji Yoshino; Tadasuke Ooka; Yasuhiro Tanizawa; Yasukazu Nakamura; Atsushi Iguchi; Tomoko Morita-Ishihara; Makoto Ohnishi; Koichi Akashi; Tetsuya Hayashi; Yoshitoshi Ogura
Genome research, Sep. 2019, [Reviewed] - Alternative Oxidase Capacity of Mitochondria in Microsporophylls May Function in Cycad Thermogenesis.
Yasuko Ito-Inaba; Mayuko Sato; Mitsuhiko P Sato; Yuya Kurayama; Haruna Yamamoto; Mizuki Ohata; Yoshitoshi Ogura; Tetsuya Hayashi; Kiminori Toyooka; Takehito Inaba
Plant physiology, Jun. 2019, [Reviewed] - Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer.
Shinichi Yachida; Sayaka Mizutani; Hirotsugu Shiroma; Satoshi Shiba; Takeshi Nakajima; Taku Sakamoto; Hikaru Watanabe; Keigo Masuda; Yuichiro Nishimoto; Masaru Kubo; Fumie Hosoda; Hirofumi Rokutan; Minori Matsumoto; Hiroyuki Takamaru; Masayoshi Yamada; Takahisa Matsuda; Motoki Iwasaki; Taiki Yamaji; Tatsuo Yachida; Tomoyoshi Soga; Ken Kurokawa; Atsushi Toyoda; Yoshitoshi Ogura; Tetsuya Hayashi; Masanori Hatakeyama; Hitoshi Nakagama; Yutaka Saito; Shinji Fukuda; Tatsuhiro Shibata; Takuji Yamada
Nature medicine, Jun. 2019, [Reviewed] - Local structural changes of the influenza A virus ribonucleoprotein complex by single mutations in the specific residues involved in efficient genome packaging.
Naoki Takizawa; Yoshitoshi Ogura; Yoko Fujita; Takeshi Noda; Hideki Shigematsu; Tetsuya Hayashi; Ken Kurokawa
Virology, May 2019, [Reviewed] - Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP.
Yoshimura D; Kajitani R; Gotoh Y; Katahira K; Okuno M; Ogura Y; Hayashi T; Itoh T
Microbial genomics, May 2019, [Reviewed] - Draft Genome Sequence of Mycolicibacterium sp. Strain NCC-Tsukiji, Isolated from Blood Culture of a Patient with Malignant Lymphoma.
Hanako Fukano; Mitsunori Yoshida; Michi Shouji; Shunsuke Hatta; Dai Maruyama; Koji Izutsu; Mika Shiotsuka; Yoshitoshi Ogura; Tetsuya Hayashi; Naoki Hasegawa; Satoshi Iwata; Yoshihiko Hoshino
Microbiology resource announcements, 04 Apr. 2019, [Reviewed] - BspR/BtrA, an Anti-σ Factor, Regulates the Ability of Bordetella bronchiseptica To Cause Cough in Rats.
Nakamura K; Shinoda N; Hiramatsu Y; Ohnishi S; Kamitani S; Ogura Y; Hayashi T; Horiguchi Y
mSphere, Apr. 2019, [Reviewed] - ヘリコバクター・ピロリのsmall RNAによる持続感染機構の解析
木下 遼; 氣駕 恒太朗; 大坪 亮太; 小椋 義俊; 真田 貴人; 岡野 徳壽; 鈴木 敏彦; 林 哲也; 三室 仁美
日本細菌学雑誌, Mar. 2019, [Reviewed] - Genomic Features of Rickettsia heilongjiangensis Revealed by Intraspecies Comparison and Detailed Comparison With Rickettsia japonica.
Kentaro Kasama; Hiromi Fujita; Seigo Yamamoto; Tadasuke Ooka; Yasuhiro Gotoh; Yoshitoshi Ogura; Shuji Ando; Tetsuya Hayashi
Frontiers in microbiology, 2019, [Reviewed] - Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a.
Ogura Y; Seto K; Morimoto Y; Nakamura K; Sato MP; Gotoh Y; Itoh T; Toyoda A; Ohnishi M; Hayashi T
Emerging infectious diseases, Dec. 2018, [Reviewed] - Multi-step genomic dissection of a suspected intra-hospital Helicobacter cinaedi outbreak.
Gotoh Y; Taniguchi T; Yoshimura D; Katsura K; Saeki Y; Hirabara Y; Fukuda M; Takajo I; Tomida J; Kawamura Y; Ogura Y; Itoh T; Misawa N; Okayama A; Hayashi T
Microbial genomics, Dec. 2018, [Reviewed] - Effects of bacterial pollution caused by a strong typhoon event and the restoration of a recreational beach: Transitions of fecal bacterial counts and bacterial flora in beach sand
Yoshihiro Suzuki; Kotaro Teranishi; Tomonori Matsuwaki; Kei Nukazawa; Yoshitoshi Ogura
Science of the Total Environment, 01 Nov. 2018, [Reviewed] - Amylibacter kogurei sp. nov., a novel marine alphaproteobacterium isolated from the coastal sea surface microlayer of a marine inlet.
Shu-Kuan Wong; Susumu Yoshizawa; Yu Nakajima; Marie Johanna Cuadra; Yuichi Nogi; Keiji Nakamura; Hideto Takami; Yoshitoshi Ogura; Tetsuya Hayashi; Hiroshi Xavier Chiura; Koji Hamasaki
International journal of systematic and evolutionary microbiology, Sep. 2018, [Reviewed] - Tracing Genomic Divergence of Vibrio Bacteria in the Harveyi Clade.
Ke HM; Liu D; Ogura Y; Hayashi T; Urbanczyk H; Tsai IJ
Journal of bacteriology, Aug. 2018, [Reviewed] - Mycobacterium shigaense sp. nov., a slow-growing, scotochromogenic species, is a member of the Mycobacterium simiae complex.
Hanako Fukano; Mitsunori Yoshida; Yuko Kazumi; Nagatoshi Fujiwara; Kinya Katayama; Yoshitoshi Ogura; Tetsuya Hayashi; Yuji Miyamoto; Noriki Fujimoto; Wang Hongsheng; Chisaki Mizumoto; Yusuke Koizumi; Hiroyoshi Maeda; Osamu Hiranuma; Satoshi Mitarai; Norihisa Ishii; Yoshihiko Hoshino
International journal of systematic and evolutionary microbiology, Aug. 2018, [Reviewed] - Complete Genome Sequence of Mycobacterium shigaense.
Mitsunori Yoshida; Hanako Fukano; Yoshitoshi Ogura; Yuko Kazumi; Satoshi Mitarai; Tetsuya Hayashi; Yoshihiko Hoshino
Genome announcements, 21 Jun. 2018, [Reviewed] - Draft Genome Sequence of Saccharospirillum sp. Strain MSK14-1, Isolated from Surface Seawater Collected at Aburatsubo Inlet in Japan.
Masumi Hasegawa; Yu Nakajima; Shu-Kuan Wong; Keiji Nakamura; Yoshitoshi Ogura; Tetsuya Hayashi; Kazuhiro Kogure; Susumu Yoshizawa
Genome announcements, 31 May 2018, [Reviewed] - Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic.
Kazue Nakanaga; Yoshitoshi Ogura; Atsushi Toyoda; Mitsunori Yoshida; Hanako Fukano; Nagatoshi Fujiwara; Yuji Miyamoto; Noboru Nakata; Yuko Kazumi; Shinji Maeda; Tadasuke Ooka; Masamichi Goto; Kazunari Tanigawa; Satoshi Mitarai; Koichi Suzuki; Norihisa Ishii; Manabu Ato; Tetsuya Hayashi; Yoshihiko Hoshino
Scientific reports, 29 May 2018, [Reviewed] - Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia.
Yohei Kumagai; Susumu Yoshizawa; Yu Nakajima; Mai Watanabe; Tsukasa Fukunaga; Yoshitoshi Ogura; Tetsuya Hayashi; Kenshiro Oshima; Masahira Hattori; Masahiko Ikeuchi; Kazuhiro Kogure; Edward F DeLong; Wataru Iwasaki
The ISME journal, May 2018, [Reviewed] - Complete genome sequence of Geobacter sulfurreducens strain YM18, isolated from river sediment in Japan
Kengo Inoue; Yoshitoshi Ogura; Yoshihiro Kawano; Tetsuya Hayashi
Genome Announcements, 01 May 2018, [Reviewed] - Small RNA repertoires and their intraspecies variation in Aggregatibacter actinomycetemcomitans
Yuichi Oogai; Yasuhiro Gotoh; Yoshitoshi Ogura; Miki Kawada-Matsuo; Tetsuya Hayashi; Hitoshi Komatsuzawa
DNA Research, 01 Apr. 2018, [Reviewed] - Presence of a Haloarchaeal Halorhodopsin-Like Cl- Pump in Marine Bacteria.
Yu Nakajima; Takashi Tsukamoto; Yohei Kumagai; Yoshitoshi Ogura; Tetsuya Hayashi; Jaeho Song; Takashi Kikukawa; Makoto Demura; Kazuhiro Kogure; Yuki Sudo; Susumu Yoshizawa
Microbes and environments, 29 Mar. 2018, [Reviewed] - Comparison of the microbial community structure between inflamed and non-inflamed sites in patients with ulcerative colitis.
Hirano A; Umeno J; Okamoto Y; Shibata H; Ogura Y; Moriyama T; Torisu T; Fujioka S; Fuyuno Y; Kawarabayasi Y; Matsumoto T; Kitazono T; Esaki M
Journal of gastroenterology and hepatology, Feb. 2018, [Reviewed] - Corrigendum to "Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan" [Syst. Appl. Microbiol. 40 (5) (2017) 290-296].
A K M Rohul Amin; Mami Tanaka; Nurhidayu Al-Saari; Gao Feng; Sayaka Mino; Yoshitoshi Ogura; Tetsuya Hayashi; Pedro M Meirelles; Fabiano L Thompson; Bruno Gomez-Gil; Toko Sawabe; Tomoo Sawabe
Systematic and applied microbiology, Jan. 2018, [Reviewed] - Availability of Nanopore sequences in the genome taxonomy for Vibrionaceae systematics: Rumoiensis clade species as a test case.
Mami Tanaka; Sayaka Mino; Yoshitoshi Ogura; Tetsuya Hayashi; Tomoo Sawabe
PeerJ, 2018, [Reviewed] - An Outbreak of Skin Infection due to Community Acquired-MRSA that Occurred among the Women Who Gave Birth in a Maternity Clinic and their Families
Tajiri Akihiko; Shimauchi Chieko; Katahira Katsuyuki; Gotoh Yasuhiro; Shigeta Mari; Kawaguchi Makiko; Tateyama Sunao; Ogura Yoshitoshi; Hayashi Tetsuya
The Japanese Journal of Dermatology, 2018 - Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed (vol 12, e0180053, 2017)
Mami Tanaka; Shoko Endo; Fumihito Kotake; Nurhidayu Al-Saari; A. K. M. Rohul Amin; Gao Feng; Sayaka Mino; Hidetaka Doi; Yoshitoshi Ogura; Tetsuya Hayashi; Wataru Suda; Masahira Hattori; Isao Yumoto; Toko Sawabe; Tomoo Sawabe; Toshiyoshi Araki
PLOS ONE, Dec. 2017, [Reviewed] - R-Spondin1 expands Paneth cells and prevents dysbiosis induced by graft-versus-host disease
Eiko Hayase; Daigo Hashimoto; Kiminori Nakamura; Clara Noizat; Reiki Ogasawara; Shuichiro Takahashi; Hiroyuki Ohigashi; Yuki Yokoi; Rina Sugimoto; Satomi Matsuoka; Takahide Ara; Emi Yokoyama; Tomohiro Yamakawa; Ko Ebata; Takeshi Kondo; Rina Hiramine; Tomoyasu Aizawa; Yoshitoshi Ogura; Tetsuya Hayashi; Hiroshi Mori; Ken Kurokawa; Kazuma Tomizuka; Tokiyoshi Ayabe; Takanori Teshima
JOURNAL OF EXPERIMENTAL MEDICINE, Dec. 2017, [Reviewed] - Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed (vol 12, e0180053, 2017)
Mami Tanaka; Shoko Endo; Fumihito Kotake; Nurhidayu Al-Saari; A. K. M. Rohul Amin; Gao Feng; Sayaka Mino; Hidetaka Doi; Yoshitoshi Ogura; Tetsuya Hayashi; Wataru Suda; Masahira Hattori; Isao Yumoto; Toko Sawabe; Tomoo Sawabe; Toshiyoshi Araki
PLOS ONE, Dec. 2017, [Reviewed] - Isolation of six novel 7-oxo- or urso-type secondary bile acid-producing bacteria from rat cecal contents
Sarinya Tawthep; Satoru Fukiya; Ja-Young Lee; Masahito Hagio; Yoshitoshi Ogura; Tetsuya Hayashi; Atsushi Yokota
JOURNAL OF BIOSCIENCE AND BIOENGINEERING, Nov. 2017, [Reviewed] - Complete and draft genome sequences of eight oceanic Pseudomonas aeruginosa strains
Yohei Kumagai; Susumu Yoshizawa; Keiji Nakamura; Yoshitoshi Ogura; Tetsuya Hayashi; Kazuhiro Kogure
Genome Announcements, 01 Nov. 2017, [Reviewed] - Complete chromosome sequence of a mycolactoneproducing mycobacterium, Mycobacterium pseudoshottsii
Mitsunori Yoshida; Yuji Miyamoto; Yoshitoshi Ogur; Tetsuya Hayashi; Yoshihiko Hoshino
Genome Announcements, 01 Nov. 2017, [Reviewed] - Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages.
Yoshitoshi Ogura; Yasuhiro Gotoh; Takehiko Itoh; Mitsuhiko P Sato; Kazuko Seto; Shyuji Yoshino; Junko Isobe; Yoshiki Etoh; Mariko Kurogi; Keiko Kimata; Eriko Maeda; Denis Piérard; Masahiro Kusumoto; Masato Akiba; Kiyoshi Tominaga; Yumi Kirino; Yuki Kato; Katsuhiko Shirahige; Tadasuke Ooka; Nozomi Ishijima; Ken-Ichi Lee; Sunao Iyoda; Jacques Georges Mainil; Tetsuya Hayashi
Microbial genomics, Nov. 2017, [Reviewed] - Complete Chromosome Sequence of a Mycolactone-Producing Mycobacterium, Mycobacterium pseudoshottsii
Mitsunori Yoshida; Yuji Miyamoto; Yoshitoshi Ogura; Tetsuya Hayashi; Yoshihiko Hoshino
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Nov. 2017 - Draft Genome Sequence of Rubricoccus marinus SG-29T, a Marine Bacterium within the Family Rhodothermaceae, Which Contains Two Different Rhodopsin Genes.
Yu Nakajima; Susumu Yoshizawa; Sanghwa Park; Yohei Kumagai; Shu-Kuan Wong; Yoshitoshi Ogura; Tetsuya Hayashi; Kazuhiro Kogure
Genome announcements, 21 Sep. 2017, [Reviewed] - Genomic Characteristics of Bifidobacterium thermacidophilum Pig Isolates and Wild Boar Isolates Reveal the Unique Presence of a Putative Mobile Genetic Element with tetW for Pig Farm Isolates
Sayaka Tsuchida; Fumito Maruyama; Yoshitoshi Ogura; Atsushi Toyoda; Tetsuya Hayashi; Moriya Okuma; Kazunari Ushida
FRONTIERS IN MICROBIOLOGY, Aug. 2017, [Reviewed] - Thaumasiovibrio occultus gen. nov sp nov and Thaumasiovibrio subtropicus sp nov within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan
A. K. M. Rohul Amin; Mami Tanaka; Nurhidayu Al-saari; Gao Feng; Sayaka Mino; Yoshitoshi Ogura; Tetsuya Hayashi; Pedro M. Meirelles; Fabiano L. Thompson; Bruno Gomez-Gil; Toko Sawabe; Tomoo Sawabe
SYSTEMATIC AND APPLIED MICROBIOLOGY, Jul. 2017, [Reviewed] - Algibacter aquaticus sp nov., a slightly alkaliphilic marine Flavobacterium isolated from coastal surface water
Shu-Kuan Wong; Sanghwa Park; Jung-Sook Lee; Keun Chul Lee; Yoshitoshi Ogura; Tetsuya Hayashi; Hiroshi Xavier Chiura; Susumu Yoshizawa; Koji Hamasaki
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Jul. 2017, [Reviewed] - Clonal Lineages of Erysipelothrix rhusiopathiae Responsible for Acute Swine Erysipelas in Japan Identified by Using Genome-Wide Single-Nucleotide Polymorphism Analysis
Yohsuke Ogawa; Kazumasa Shiraiwa; Yoshitoshi Ogura; Tadasuke Ooka; Sayaka Nishikawa; Masahiro Eguchi; Tetsuya Hayashi; Yoshihiro Shimoji
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Jun. 2017, [Reviewed] - Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed
Mami Tanaka; Shoko Endo; Fumihito Kotake; Nurhidayu Al-Saari; A. K. M. Rohul Amin; Gao Feng; Sayaka Mino; Hidetaka Doi; Yoshitoshi Ogura; Tetsuya Hayashi; Wataru Suda; Masahira Hattori; Isao Yumoto; Toko Sawabe; Tomoo Sawabe; Toshiyoshi Araki
PLOS ONE, Jun. 2017, [Reviewed] - A Geographically Widespread Outbreak Investigation and Development of a Rapid Screening Method Using Whole Genome Sequences of Enterohemorrhagic Escherichia coli O121
Ken-ichi Lee; Tomoko Morita-Ishihara; Sunao Iyoda; Yoshitoshi Ogura; Tetsuya Hayashi; Tsuyoshi Sekizuka; Makoto Kuroda; Makoto Ohnishi
FRONTIERS IN MICROBIOLOGY, Apr. 2017, [Reviewed] - Identification of Shiga toxin-producing (STEC) and enteropathogenic (EPEC) Escherichia coli in diarrhoeic calves and comparative genomics of O5 bovine and human STEC
I. Fakih; D. Thiry; J. N. Duprez; M. Saulmont; A. Iguchi; D. Piérard; L. Jouant; G. Daube; Y. Ogura; T. Hayashi; B. Taminiau; J. G. Mainil
Veterinary Microbiology, 01 Apr. 2017, [Reviewed] - Draft Genome Sequences of Tersicoccus phoenicis DSM 30849T, Isolated from a Cleanroom for Spacecraft Assembly, and Tersicoccus sp. Strain Bi-70, Isolated from a Freshwater Lake.
Yu Nakajima; Susumu Yoshizawa; Keiji Nakamura; Yoshitoshi Ogura; Tetsuya Hayashi; Kazuhiro Kogure
Genome announcements, 30 Mar. 2017, [Reviewed] - Identification of a New Virulent Clade in Enterohemorrhagic Escherichia coli O26: H11/H-Sequence Type 29
Nozomi Ishijima; Ken-ichi Lee; Tomomi Kuwahara; Haruyuki Nakayama-Imaohji; Saori Yoneda; Atsushi Iguchi; Yoshitoshi Ogura; Tetsuya Hayashi; Makoto Ohnishi; Sunao Iyoda
SCIENTIFIC REPORTS, Feb. 2017, [Reviewed] - Antibiotic Resistance Profiling and Genotyping of Vancomycin-Resistant Enterococci Collected from an Urban River Basin in the Provincial City of Miyazaki, Japan
Masateru Nishiyama; Yoshitoshi Ogura; Tetsuya Hayashi; Yoshihiro Suzuki
WATER, Feb. 2017, [Reviewed] - Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan
Arzuba Akter; Tadasuke Ooka; Yasuhiro Gotoh; Seigo Yamamoto; Hiromi Fujita; Fumio Terasoma; Kouji Kida; Masakatsu Taira; Fumiko Nakadouzono; Mutsuyo Gokuden; Manabu Hirano; Mamoru Miyashiro; Kouichi Inari; Yukie Shimazu; Kenji Tabara; Atsushi Toyoda; Dai Yoshimura; Takehiko Itoh; Tomokazu Kitano; Mitsuhiko P. Sato; Keisuke Katsura; Shakhinur Islam Mondal; Yoshitoshi Ogura; Shuji Ando; Tetsuya Hayashi
GENOME BIOLOGY AND EVOLUTION, Jan. 2017, [Reviewed] - Non-exponential growth of Mycobacterium leprae Thai-53 strain cultured in vitro
Kazunobu Amako; Ken-ichiro Iida; Mitsumasa Saito; Yoshitoshi Ogura; Tetsuya Hayashi; Shin-ichi Yoshida
MICROBIOLOGY AND IMMUNOLOGY, Dec. 2016, [Reviewed] - Genes essential for the morphogenesis of the Shiga toxin 2-transducing phage from Escherichia coli O157:H7
Shakhinur Islam Mondal; Md Rakibul Islam; Akira Sawaguchi; Md Asadulghani; Tadasuke Ooka; Yasuhiro Gotoh; Yasuhiro Kasahara; Yoshitoshi Ogura; Tetsuya Hayashi
SCIENTIFIC REPORTS, Dec. 2016, [Reviewed] - Complete Genome Sequence of Mycobacterium ulcerans subsp. shinshuense.
Mitsunori Yoshida; Kazue Nakanaga; Yoshitoshi Ogura; Atsushi Toyoda; Tadasuke Ooka; Yuko Kazumi; Satoshi Mitarai; Norihisa Ishii; Tetsuya Hayashi; Yoshihiko Hoshino
Genome announcements, 29 Sep. 2016, [Reviewed] - Genomic evidence that Vibrio inhibens is a heterotypic synonym of Vibrio jasicida
Yoshiko Urbanczyk; Yoshitoshi Ogura; Tetsuya Hayashi; Henryk Urbanczyk
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Aug. 2016, [Reviewed] - Phylogenetic Analysis of Enteroaggregative Escherichia coli (EAEC) Isolates from Japan Reveals Emergence of CTX-M-14-Producing EAEC O25:H4 Clones Related to Sequence Type 131
Naoko Imuta; Tadasuke Ooka; Kazuko Seto; Ryuji Kawahara; Toyoyasu Koriyama; Tsuyoshi Kojyo; Atsushi Iguchi; Koichi Tokuda; Hideki Kawamura; Kiyotaka Yoshiie; Yoshitoshi Ogura; Tetsuya Hayashi; Junichiro Nishi
JOURNAL OF CLINICAL MICROBIOLOGY, Aug. 2016, [Reviewed] - Draft Genome Sequence of Lewinella sp. Strain 4G2 Isolated from the Coastal Sea Surface Microlayer.
Shu-Kuan Wong; Susumu Yoshizawa; Yu Nakajima; Yoshitoshi Ogura; Tetsuya Hayashi; Koji Hamasaki
Genome announcements, 28 Jul. 2016, [Reviewed] - Colistin-Resistant mcr-1-Positive Pathogenic Escherichia coil in Swine, Japan, 2007-2014
Masahiro Kusumoto; Yoshitoshi Ogura; Yasuhiro Gotoh; Taketoshi Iwata; Tetsuya Hayashi; Masato Akiba
EMERGING INFECTIOUS DISEASES, Jul. 2016, [Reviewed] - Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae
Kazunari Ushida; Sayaka Tsuchida; Yoshitoshi Ogura; Atsushi Toyoda; Fumito Maruyama
ANIMAL SCIENCE JOURNAL, Jun. 2016, [Reviewed] - Genetic relatedness and virulence properties of enteropathogenic Escherichia coli strains of serotype O119:H6 expressing localized adherence or localized and aggregative adherence-like patterns on HeLa cells
Bruna G. Garcia; Tadasuke Ooka; Yasuhiro Gotoh; Monica A. M. Vieira; Denise Yamamoto; Yoshitoshi Ogura; Dennys M. Girao; Suely C. F. Sampaio; Alexis Bonfim Melo; Kinue Irino; Tetsuya Hayashi; Tania A. T. Gomes
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, May 2016, [Reviewed] - Six Novel O Genotypes from Shiga Toxin-Producing Escherichia coil
Atsushi Iguchi; Sunao Iyoda; Kazuko Seto; Hironobu Nishii; Makoto Ohnishi; Hirohisa Mekata; Yoshitoshi Ogura; Tetsuya Hayashi
FRONTIERS IN MICROBIOLOGY, May 2016, [Reviewed] - Emergence of a Multidrug-Resistant Shiga Toxin-Producing Enterotoxigenic Escherichia coli Lineage in Diseased Swine in Japan
Masahiro Kusumoto; Yuna Hikoda; Yuki Fujii; Misato Murata; Hirotsugu Miyoshi; Yoshitoshi Ogura; Yasuhiro Gotoh; Taketoshi Iwata; Tetsuya Hayashi; Masato Akiba
JOURNAL OF CLINICAL MICROBIOLOGY, Apr. 2016, [Reviewed] - The genomic basis of parasitism in the Strongyloides clade of nematodes
Vicky L. Hunt; Isheng J. Tsai; Avril Coghlan; Adam J. Reid; Nancy Holroyd; Bernardo J. Foth; Alan Tracey'; James A. Cotton'; Eleanor J. Stanley; Helen Beasley; Hayley M. Bennett; Karen Brooks; Bhavana Harsha; Rei Kajitani; Arpita Kulkarni; Dorothee Harbecke; Eiji Nagayasu; Sarah Nichol; Yoshitoshi Ogura; Michael A. Quail; Nadine Randle; Dong Xia; Norbert W. Brattig; Hanns Soblik; Diogo M. Ribeiro; Alejandro Sanchez-Flores; Tetsuya Hayashi; Takehiko Itoh; Dee R. Denver; Warwick Grant; Jonathan D. Stoltzfus; James B. Lok; Haruhiko Murayama; Jonathan Wastling; Adrian Streit; Taisei Kikuchi; Mark Viney; Matthew Berriman
NATURE GENETICS, Mar. 2016, [Reviewed] - The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat
Mariko Naito; Yoshitoshi Ogura; Takehiko Itoh; Mikio Shoji; Masaaki Okamoto; Tetsuya Hayashi; Koji Nakayama
DNA RESEARCH, Feb. 2016, [Reviewed] - Complete genome sequence of Methylobacterium aquaticum strain 22A, isolated from a Racomitrium japonicum moss
Akio Tani; Yoshitoshi Ogura; Tetsuya Hayashi; Kazuhide Kimbara
Genome Announcements, 2016, [Reviewed] - Draft Genome Sequences of Sarcina ventriculi Strains Isolated from Wild Japanese Macaques in Yakushima Island
Kazunari Ushida; Sayaka Tsuchida; Yoshitoshi Ogura; Tetsuya Hayashi; Akiko Sawada; Goro Hanya
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Jan. 2016, [Reviewed] - Complete genome sequence of Klebsiella pneumoniae YH43
Tadayuki Iwase; Yoshitoshi Ogura; Tetsuya Hayashi; Yoshimitsu Mizunoe
Genome Announcements, 2016, [Reviewed] - Draft genome sequences of five rapidly growing Mycobacterium species, M. thermoresistibile, M. fortuitum subsp. acetamidolyticum, M. canariasense, M. brisbanense, and M. novocastrense
Katsuyuki Katahira; Yoshitoshi Ogura; Yasuhiro Gotoh; Tetsuya Hayashi
Genome Announcements, 2016, [Reviewed] - Complete genome sequence of Klebsiella oxytoca strain JKo3
Tadayuki Iwase; Yoshitoshi Ogura; Tetsuya Hayashi; Yoshimitsu Mizunoe
Genome Announcements, 2016, [Reviewed] - Complete genome sequence of a phycodnavirus, Heterosigma akashiwo virus strain 53
Yoshitoshi Ogura; Tetsuya Hayashi; Shoko Ueki
Genome Announcements, 2016, [Reviewed] - Mitochondrial genome sequences of four strains of the bloom-forming raphidophyte Heterosigma akashiwo
Yoshitoshi Ogura; Natsuko Nakayama; Tetsuya Hayashi; Shoko Ueki
Genome Announcements, 2016, [Reviewed] - Draft genome sequences of two Fabibacter sp. strains isolated from coastal surface water of Aburatsubo Inlet, Japan
Ryo Kaneko; Shu-Kuan Wong; Yoshitoshi Ogura; Tetsuya Hayashi; Susumu Yoshizawa; Koji Hamasaki
Genome Announcements, 2016, [Reviewed] - Complete genome sequence of Streptococcus sp. strain NPS 308
Yoshio Kondo; Yoshitoshi Ogura; Keiko Sato; Keigo Imamura; Tomonori Hoshino; Miyuki Nishiguchi; Tomoyuki Hasuwa; Hiroyuki Moriuchi; Tetsuya Hayashi; Taku Fujiwara
Genome Announcements, 2016, [Reviewed] - Defining the Genome Features of Escherichia albertii, an Emerging Enteropathogen Closely Related to Escherichia coli
Tadasuke Ooka; Yoshitoshi Ogura; Keisuke Katsura; Kazuko Seto; Hideki Kobayashi; Kimiko Kawano; Eisuke Tokuoka; Masato Furukawa; Seiya Harada; Shuji Yoshino; Junji Seto; Tetsuya Ikeda; Keiji Yamaguchi; Kazunori Murase; Yasuhiro Gotoh; Naoko Imuta; Junichiro Nishi; Tania A. Gomes; Lothar Beutin; Tetsuya Hayashi
GENOME BIOLOGY AND EVOLUTION, Dec. 2015, [Reviewed] - The Shiga toxin 2 production level in enterohemorrhagic Escherichia coli O157:H7 is correlated with the subtypes of toxin-encoding phage
Yoshitoshi Ogura; Shakhinur Islam Mondal; Md Rakibul Islam; Toshihiro Mako; Kokichi Arisawa; Keisuke Katsura; Tadasuke Ooka; Yasuhiro Gotoh; Kazunori Murase; Makoto Ohnishi; Tetsuya Hayashi
SCIENTIFIC REPORTS, Nov. 2015, [Reviewed] - A New Screen for Tuberculosis Drug Candidates Utilizing a Luciferase-Expressing Recombinant Mycobacterium bovis Bacillus Calmette-Gueren
Yuriko Ozeki; Masayuki Igarashi; Matsumi Doe; Aki Tamaru; Naoko Kinoshita; Yoshitoshi Ogura; Tomotada Iwamoto; Ryuichi Sawa; Maya Umekita; Shymaa Enany; Yukiko Nishiuchi; Mayuko Osada-Oka; Tetsuya Hayashi; Mamiko Niki; Yoshitaka Tateishi; Masaki Hatano; Sohkichi Matsumoto
PLOS ONE, Nov. 2015, [Reviewed] - Draft Genome Sequence of Lactobacillus gorillae Strain KZ01 T , Isolated from a Western Lowland Gorilla
Sayaka Tsuchida; Maiko Nezuo; Masatoshi Tsukahara; Yoshitoshi Ogura; Tetsuya Hayashi; Kazunari Ushida
Genome Announcements, 29 Oct. 2015, [Reviewed] - Corrigendum to "Description of a novel marine bacterium, Vibrio hyugaensis sp. nov., based on genomic and phenotypic characterization" [Syst. Appl. Microbiol. 38 (July (5)) (2015) 300-304] DOI: 10.1016/j.syapm.2015.04.001
Yoshiko Urbanczyk; Yoshitoshi Ogura; Tetsuya Hayashi; Henryk Urbanczyk
Systematic and Applied Microbiology, 01 Oct. 2015, [Reviewed] - Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses
Yuta Matsumura; Hidayu Al-saari; Sayaka Mino; Satoshi Nakagawa; Fumito Maruyama; Yoshitoshi Ogura; Tetsuya Hayashi; Ken Kurokawa; Toko Sawabe; Tomoo Sawabe
INTERNATIONAL JOURNAL OF HYDROGEN ENERGY, Aug. 2015, [Reviewed], [Invited] - Description of a novel marine bacterium, Vibrio hyugaensis sp nov., based on genomic and phenotypic characterization
Yoshiko Urbanczyk; Yoshitoshi Ogura; Tetsuya Hayashi; Henryk Urbanczyk
SYSTEMATIC AND APPLIED MICROBIOLOGY, Jul. 2015, [Reviewed] - Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence
Hisaya Kojima; Yoshitoshi Ogura; Nozomi Yamamoto; Tomoaki Togashi; Hiroshi Mori; Tomohiro Watanabe; Fumiko Nemoto; Ken Kurokawa; Tetsuya Hayashi; Manabu Fukui
ISME JOURNAL, May 2015, [Reviewed] - Persistence and Epidemic Propagation of a Pseudomonas aeruginosa Sequence Type 235 Clone Harboring an IS26 Composite Transposon Carrying the bla(IMP-1) Integron in Hiroshima, Japan, 2005 to 2012
Wataru Shimizu; Shizuo Kayama; Shuntaro Kouda; Yoshitoshi Ogura; Kanao Kobayashi; Norifumi Shigemoto; Norimitsu Shimada; Raita Yano; Junzo Hisatsune; Fuminori Kato; Tetsuya Hayashi; Taijiro Sueda; Hiroki Ohge; Motoyuki Sugai
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, May 2015, [Reviewed] - Complete Genome Sequence of Methylobacterium aquaticum Strain 22A, Isolated from Racomitrium japonicum Moss
Akio Tani; Yoshitoshi Ogura; Tetsuya Hayashi; Kazuhide Kimbara
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Mar. 2015 - A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster
Atsushi Iguchi; Sunao Iyoda; Taisei Kikuchi; Yoshitoshi Ogura; Keisuke Katsura; Makoto Ohnishi; Tetsuya Hayashi; Nicholas R. Thomson
DNA RESEARCH, Feb. 2015, [Reviewed] - Polymorphisms Influencing Expression of Dermonecrotic Toxin in Bordetella bronchiseptica
Keisuke Okada; Hiroyuki Abe; Fumio Ike; Yoshitoshi Ogura; Tetsuya Hayashi; Aya Fukui-Miyazaki; Keiji Nakamura; Naoaki Shinzawa; Yasuhiko Horiguchi
PLOS ONE, Feb. 2015, [Reviewed] - Contrasting Inter- and Intraspecies Recombination Patterns in the "Harveyi Clade" Vibrio Collected over Large Spatial and Temporal Scales
Henryk Urbanczyk; Yoshitoshi Ogura; Tetsuya Hayashi
GENOME BIOLOGY AND EVOLUTION, Jan. 2015, [Reviewed] - Draft genome sequence of the archiascomycetous yeast Saitoella complicata
Kenta Yamauchi; Shinji Kondo; Makiko Hamamoto; Yurika Takahashi; Yoshitoshi Ogura; Tetsuya Hayashi; Hiromi Nishida
Genome Announcements, 2015, [Reviewed] - Corrigendum: Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp nov.
Tomoo Sawabe; Yoshitoshi Ogura; Yuta Matsumura; Gao Feng; A. K. M. Rohul Amin; Sayaka Mino; Satoshi Nakagawa; Toko Sawabe; Ramesh Kumar; Yohei Fukui; Masataka Satomi; Ryoji Matsushima; Fabiano L. Thompson; Bruno Gomez Gil; Richard Christen; Fumito Maruyama; Ken Kurokawa; Tetsuya Hayashi
FRONTIERS IN MICROBIOLOGY, Nov. 2014, [Reviewed] - Assessment of Helminth Biodiversity in Wild Rats Using 18S rDNA Based Metagenomics
Ryusei Tanaka; Akina Hino; Isheng J. Tsai; Juan Emilio Palomares-Rius; Ayako Yoshida; Yoshitoshi Ogura; Tetsuya Hayashi; Haruhiko Maruyama; Taisei Kikuchi
PLOS ONE, Oct. 2014, [Reviewed] - Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
Rei Kajitani; Kouta Toshimoto; Hideki Noguchi; Atsushi Toyoda; Yoshitoshi Ogura; Miki Okuno; Mitsuru Yabana; Masayuki Harada; Eiji Nagayasu; Haruhiko Maruyama; Yuji Kohara; Asao Fujiyama; Tetsuya Hayashi; Takehiko Itoh
GENOME RESEARCH, Aug. 2014, [Reviewed] - Genome Evolution and Plasticity of Serratia marcescens, an Important Multidrug-Resistant Nosocomial Pathogen
Atsushi Iguchi; Yutaka Nagaya; Elizabeth Pradel; Tadasuke Ooka; Yoshitoshi Ogura; Keisuke Katsura; Ken Kurokawa; Kenshiro Oshima; Masahira Hattori; Julian Parkhill; Mohamed Sebaihia; Sarah J. Coulthurst; Naomasa Gotoh; Nicholas R. Thomson; Jonathan J. Ewbank; Tetsuya Hayashi
GENOME BIOLOGY AND EVOLUTION, Aug. 2014, [Reviewed] - Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria
Susumu Yoshizawa; Yohei Kumagai; Hana Kim; Yoshitoshi Ogura; Tetsuya Hayashi; Wataru Iwasaki; Edward F. DeLong; Kazuhiro Kogure
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, May 2014, [Reviewed] - Various pAQU plasmids possibly contribute to disseminate tetracycline resistance gene tet(M) among marine bacterial community
Lisa Nonaka; Fumito Maruyama; Yuki Onishi; Takeshi Kobayashi; Yoshitoshi Ogura; Tetsuya Hayashi; Satoru Suzuki; Michiaki Masuda
FRONTIERS IN MICROBIOLOGY, May 2014, [Reviewed] - Lineage-Specific Distribution of Insertion Sequence Excision Enhancer in Enterotoxigenic Escherichia coli Isolated from Swine
Masahiro Kusumoto; Dai Fukamizu; Yoshitoshi Ogura; Eiji Yoshida; Fumiko Yamamoto; Taketoshi Iwata; Tadasuke Ooka; Masato Akiba; Tetsuya Hayashi
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Feb. 2014, [Reviewed] - Draft genome sequence of Clostridium botulinum type B strain Osaka05, isolated from an infant patient with botulism in Japan
Yoshihiko Sakaguchi; Koji Hosomi; Jumpei Uchiyama; Yoshitoshi Ogura; Kaoru Umeda; Masakiyo Sakaguchi; Tomoko Kohda; Masafumi Mukamoto; Naoaki Misawa; Shigenobu Matsuzaki; Tetsuya Hayashi; Shunji Kozaki
Genome Announcements, 2014, [Reviewed] - Complete genome sequence of Pseudomonas aeruginosa MTB-1, isolated from a microbial community enriched by the technical formulation of hexachlorocyclohexane
Yoshiyuki Ohtsubo; Takuya Sato; Kouhei Kishida; Michro Tabata; Yoshitoshi Ogura; Tetsuya Hayashi; Masataka Tsuda; Yuji Nagata
Genome Announcements, 2014, [Reviewed] - Complete genome sequence of Pseudomonas sp. strain TKP, isolated from a γ-hexachlorocyclohexane-degrading mixed culture
Yoshiyuki Ohtsubo; Kouhei Kishida; Takuya Sato; Michiro Tabata; Toru Kawasumi; Yoshitoshi Ogura; Tetsuya Hayashim; Masataka Tsuda; Yuji Nagata
Genome Announcements, 2014, [Reviewed] - A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli
Naoki Sudo; Akiko Soma; Akira Muto; Sunao Iyoda; Mayumi Suh; Nanako Kurihara; Hiroyuki Abe; Toru Tobe; Yoshitoshi Ogura; Tetsuya Hayashi; Ken Kurokawa; Makoto Ohnishi; Yasuhiko Sekine
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 2014, [Reviewed] - Complete genome sequence of Bordetella bronchiseptica S798, an isolate from a pig with atrophic rhinitis
Keisuke Okada; Yoshitoshi Ogura; Tetsuya Hayashi; Akio Abe; Asaomi Kuwae; Yasuhiko Horiguchi; Hiroyuki Abe
Genome Announcements, 2014, [Reviewed] - Phylogenetic clades 6 and 8 of enterohemorrhagic Escherichia coli O157: H7 With particular stx subtypes are more frequently found in isolates from hemolytic uremic syndrome patients than from asymptomatic carriers
Sunao Iyoda; EHEC Working Group in Japan; Shannon D. Manning; Kazuko Seto; Keiko Kimata; Junko Isobe; Yoshiki Etoh; Sachiko Ichihara; Yuji Migita; Kikuyo Ogata; Mikiko Honda; Tsutomu Kubota; Kimiko Kawano; Kazutoshi Matsumoto; Jun Kudaka; Norio Asai; Junko Yabata; Kiyoshi Tominaga; Jun Terajima; Tomoko Morita-Ishihara; Hidemasa Izumiya; Yoshitoshi Ogura; Takehito Saitoh; Atsushi Iguchi; Hideki Kobayashi; Yukiko Hara-Kudo; Makoto Ohnishi; Kazumi Horikawa; Nanami Asoshima; Mitsuhiro Kameyama; Reiko Arai; Masao Kawase; Yukiko Asano; Kazuki Chiba; Ichiro Furukawa; Toshiro Kuroki; Madoka Hamada; Seiya Harada; Takashi Hatakeyama; Takashi Hirochi; Yumiko Sakamoto; Midori Hiroi; Takashi Kanda; Kaori Iwabuchi; Hitomi Kasahara; Shinya Kawanishi; Koji Kikuchi; Hiroyuki Ueno; Tomoko Kitahashi; Yuka Kojima; Noriko Konishi; Hiromi Obata; Akemi Kai; Tomomi Kono; Takayuki Kurazono; Masakado Matsumoto; Yuko Matsumoto; Yuhki Nagai; Hideki Naitoh; Hiroshi Nakajima; Hiromi Nakamura; Kunihiko Nakane; Keiko Nishi; Etsuko Saitoh; Hiroaki Satoh; Mitsuteru Takamura; Yutaka Shiraki; Junichi Tanabe; Keiko Tanaka; Yuki Tokoi; Jun Yatsuyanagi
Open Forum Infectious Diseases, 2014, [Reviewed] - Diversification of Two Lineages of Symbiotic photobacterium
Henryk Urbanczyk; Yoshiko Urbanczyk; Tetsuya Hayashi; Yoshitoshi Ogura
PLOS ONE, Dec. 2013, [Reviewed] - Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp nov.
Tomoo Sawabe; Yoshitoshi Ogura; Yuta Matsumura; Gao Feng; A. K. M. Rohul Amin; Sayaka Mino; Satoshi Nakagawa; Toko Sawabe; Ramesh Kumar; Yohei Fukui; Masataka Satomi; Ryoji Matsushima; Fabiano L. Thompson; Bruno Gomez-Gil; Richard Christen; Fumito Maruyama; Ken Kurokawa; Tetsuya Hayashi
FRONTIERS IN MICROBIOLOGY, Dec. 2013, [Reviewed] - Involvement of the novel two-component nsrrs and lcrrs systems in distinct resistance pathways against nisin a and nukacin isk-1 in streptococcus mutans
miki Kawada-Matsuo; Yuichi Oogai; Takeshi Zendo; Junichi Nagao; Yukie Shibata; Yoshihisa Yamashita; Yoshitoshi Ogura; Tetsuya Hayashi; Kenji Sonomoto; Hitoshi Komatsuzawa
Applied and Environmental Microbiology, Aug. 2013, [Reviewed] - Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences
Henryk Urbanczyk; Yoshitoshi Ogura; Tetsuya Hayashi
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Jul. 2013, [Reviewed] - Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis
Eiji Nagayasu; Yoshitoshi Ogura; Takehiko Itoh; Ayako Yoshida; Gunimala Chakraborty; Tetsuya Hayashi; Haruhiko Maruyama
PARASITOLOGY INTERNATIONAL, Feb. 2013, [Reviewed] - Human Gastroenteritis Outbreak Associated with Escherichia albertii, Japan
Tadasuke Ooka; Eisuke Tokuoka; Masato Furukawa; Tetsuya Nagamura; Yoshitoshi Ogura; Kokichi Arisawa; Seiya Harada; Tetsuya Hayashi
EMERGING INFECTIOUS DISEASES, Jan. 2013, [Reviewed] - Complete genome sequence of a Propionibacterium acnes isolate from a sarcoidosis patient
Kana Minegishi; Chihiro Aikawa; Asuka Furukawa; Takayasu Watanabe; Tsubasa Nakano; Yoshitoshi Ogura; Yoshiyuki Ohtsubo; Ken Kurokawa; Tetsuya Hayashi; Fumito Maruyama; Ichiro Nakagawa; Yoshinobu Eishi
Genome Announcements, 2013, [Reviewed] - Whole-genome sequence of the potentially hypertransmissible multidrug-resistant Mycobacterium tuberculosis Beijing strain OM-V02_005
Yoshitaka Tateishi; Aki Tamaru; Yoshitoshi Ogura; Mamiko Niki; Takayuki Wada; Taro Yamamoto; Kazuto Hirata; Tetsuya Hayashi; Sohkichi Matsumoto
Genome Announcements, 2013, [Reviewed] - Whole-Genome Sequence of the Hypervirulent Clinical Strain Mycobacterium intracellulare M.i.198
Yoshitaka Tateishi; Seigo Kitada; Keisuke Miki; Ryoji Maekura; Yoshitoshi Ogura; Yuriko Ozeki; Yukiko Nishiuchi; Mamiko Niki; Tetsuya Hayashi; Kazuto Hirata; Kazuo Kobayashi; Sohkichi Matsumoto
JOURNAL OF BACTERIOLOGY, Nov. 2012, [Reviewed] - Whole-genome sequence of the hypervirulent clinical strain Mycobacterium intracellulare M.i.198.
Yoshitaka Tateishi; Seigo Kitada; Keisuke Miki; Ryoji Maekura; Yoshitoshi Ogura; Yuriko Ozeki; Yukiko Nishiuchi; Mamiko Niki; Tetsuya Hayashi; Kazuto Hirata; Kazuo Kobayashi; Sohkichi Matsumoto
Journal of bacteriology, Nov. 2012 - Detection of diverse aquatic microbes in blood and organs of drowning victims: First metagenomic approach using high-throughput 454-pyrosequencing
Eiji Kakizaki; Yoshitoshi Ogura; Shuji Kozawa; Sho Nishida; Taketo Uchiyama; Tetsuya Hayashi; Nobuhiro Yukawa
FORENSIC SCIENCE INTERNATIONAL, Jul. 2012, [Reviewed] - Complete Genome Sequence of Helicobacter cinaedi Strain PAGU611, Isolated in a Case of Human Bacteremia
Takatsugu Goto; Yoshitoshi Ogura; Hideki Hirakawa; Junko Tomida; Yuji Morita; Takaaki Akaike; Tetsuya Hayashi; Yoshiaki Kawamura
JOURNAL OF BACTERIOLOGY, Jul. 2012, [Reviewed] - A sensitive and simple plaque formation method for the Stx2 phage of Escherichia coli O157:H7, which does not form plaques in the standard plating procedure
Md Rakibul Islam; Yoshitoshi Ogura; Md Asadulghani; Tadasuke Ooka; Kazunori Murase; Yasuhiro Gotoh; Tetsuya Hayashi
PLASMID, May 2012, [Reviewed] - Haemolysin E- and enterohaemolysin-derived haemolytic activity of O55/O157 strains and other Escherichia coli lineages
Kazunori Murase; Tadasuke Ooka; Atsushi Iguchi; Yoshitoshi Ogura; Keisuke Nakayama; Md Asadulghani; Md Rakibul Islam; Hirotaka Hiyoshi; Toshio Kodama; Lothar Beutin; Tetsuya Hayashi
MICROBIOLOGY-SGM, Mar. 2012, [Reviewed] - Clinical Significance of Escherichia albertii
Tadasuke Ooka; Kazuko Seto; Kimiko Kawano; Hideki Kobayashi; Yoshiki Etoh; Sachiko Ichihara; Akiko Kaneko; Junko Isobe; Keiji Yamaguchi; Kazumi Horikawa; Tania A. T. Gomes; Annick Linden; Marjorie Bardiau; Jacques G. Mainil; Lothar Beutin; Yoshitoshi Ogura; Tetsuya Hayashi
EMERGING INFECTIOUS DISEASES, Mar. 2012, [Reviewed] - Is bile acid a determinant of the gut microbiota on a high-fat diet?
Atsushi Yokota; Satoru Fukiya; Tadasuke Ooka; Yoshitoshi Ogura; Tetsuya Hayashi; Satoshi Ishizuka
Gut Microbes, 2012, [Reviewed] - Bile Acid Is a Host Factor That Regulates the Composition of the Cecal Microbiota in Rats
K. B. M. Saiful Islam; Satoru Fukiya; Masahito Hagio; Nobuyuki Fujii; Satoshi Ishizuka; Tadasuke Ooka; Yoshitoshi Ogura; Tetsuya Hayashi; Atsushi Yokota
GASTROENTEROLOGY, Nov. 2011, [Reviewed] - [Genomic analyses of mechanisms of virulence evolution in enterohemorrhagic E. coli and enteropathogenic E. coli].
Ogura Y
Nihon saikingaku zasshi. Japanese journal of bacteriology, Oct. 2011, [Reviewed] - Wide Distribution of O157-Antigen Biosynthesis Gene Clusters in Escherichia coli
Atsushi Iguchi; Hiroki Shirai; Kazuko Seto; Tadasuke Ooka; Yoshitoshi Ogura; Tetsuya Hayashi; Kayo Osawa; Ro Osawa
PLOS ONE, Aug. 2011, [Reviewed] - The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing
Tomomi Kuwahara; Yositoshi Ogura; Kenshiro Oshima; Ken Kurokawa; Tadasuke Ooka; Hideki Hirakawa; Takehiko Itoh; Haruyuki Nakayama-Imaohji; Minoru Ichimura; Kikuji Itoh; Chieko Ishifune; Yoichi Maekawa; Koji Yasutomo; Masahira Hattori; Tetsuya Hayashi
DNA RESEARCH, Aug. 2011, [Reviewed] - Characterization of the Porphyromonas gingivalis conjugative transposon CTnPg1: determination of the integration site and the genes essential for conjugal transfer.
Naito M; Sato K; Shoji M; Yukitake H; Ogura Y; Hayashi T; Nakayama K
Microbiology (Reading, England), Jul. 2011, [Reviewed] - Genome Sequence of Photobacterium mandapamensis Strain svers. 1.1, the Bioluminescent Symbiont of the Cardinal Fish Siphamia versicolor
Henryk Urbanczyk; Yoshitoshi Ogura; Tory A. Hendry; Alison L. Gould; Naomi Kiwaki; Joshua T. Atkinson; Tetsuya Hayashi; Paul V. Dunlap
JOURNAL OF BACTERIOLOGY, Jun. 2011, [Reviewed] - The Genome of Erysipelothrix rhusiopathiae, the Causative Agent of Swine Erysipelas, Reveals New Insights into the Evolution of Firmicutes and the Organism's Intracellular Adaptations
Yohsuke Ogawa; Tadasuke Ooka; Fang Shi; Yoshitoshi Ogura; Keisuke Nakayama; Tetsuya Hayashi; Yoshihiro Shimoji
JOURNAL OF BACTERIOLOGY, Jun. 2011, [Reviewed] - Insertion sequence-excision enhancer removes transposable elements from bacterial genomes and induces various genomic deletions
Masahiro Kusumoto; Tadasuke Ooka; Yoshiaki Nishiya; Yoshitoshi Ogura; Takashi Saito; Yasuhiko Sekine; Taketoshi Iwata; Masato Akiba; Tetsuya Hayashi
NATURE COMMUNICATIONS, Jan. 2011, [Reviewed] - Genome Comparison and Phylogenetic Analysis of Orientia tsutsugamushi Strains
Keisuke Nakayama; Ken Kurokawa; Masahiro Fukuhara; Hiroshi Urakami; Seigo Yamamoto; Kazuko Yamazaki; Yoshitoshi Ogura; Tadasuke Ooka; Tetsuya Hayashi
DNA RESEARCH, Oct. 2010, [Reviewed] - Complete Genome Sequence of the Wild-Type Commensal Escherichia coli Strain SE15, Belonging to Phylogenetic Group B2
Hidehiro Toh; Kenshiro Oshima; Atsushi Toyoda; Yoshitoshi Ogura; Tadasuke Ooka; Hiroyuki Sasamoto; Sang-Hee Park; Sunao Iyoda; Ken Kurokawa; Hidetoshi Morita; Kikuji Itoh; Todd D. Taylor; Tetsuya Hayashi; Masahira Hattori
JOURNAL OF BACTERIOLOGY, Feb. 2010, [Reviewed] - Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes
Tadasuke Ooka; Yoshitoshi Ogura; Md Asadulghani; Makoto Ohnishi; Keisuke Nakayama; Jun Terajima; Haruo Watanabe; Tetsuya Hayashi
GENOME RESEARCH, Oct. 2009, [Reviewed] - Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
Yoshitoshi Ogura; Tadasuke Ooka; Atsushi Iguchi; Hidehiro Toh; Md Asadulghani; Kenshiro Oshima; Toshio Kodama; Hiroyuki Abe; Keisuke Nakayama; Ken Kurokawa; Toru Tobe; Masahira Hattori; Tetsuya Hayashi
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Oct. 2009, [Reviewed] - Pulsed-Field Gel Electrophoresis Profile Changes Resulting from Spontaneous Chromosomal Deletions in Enterohemorrhagic Escherichia coli O157:H7 during Passage in Cattle
Noriyo Yoshii; Yoshitoshi Ogura; Tetsuya Hayashi; Takashi Ajiro; Toshiya Sameshima; Muneo Nakazawa; Masahiro Kusumoto; Taketoshi Iwata; Masato Akiba
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Sep. 2009, [Reviewed] - Development of a Multiplex PCR-Based Rapid Typing Method for Enterohemorrhagic Escherichia coli O157 Strains
Tadasuke Ooka; Jun Terajima; Masahiro Kusumoto; Atsushi Iguchi; Ken Kurokawa; Yoshitoshi Ogura; Md Asadulghani; Keisuke Nakayama; Kazunori Murase; Makoto Ohnishi; Sunao Iyoda; Haruo Watanabe; Tetsuya Hayashi
JOURNAL OF CLINICAL MICROBIOLOGY, Sep. 2009, [Reviewed] - The Defective Prophage Pool of Escherichia coli O157: Prophage-Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants
Md Asadulghani; Yoshitoshi Ogura; Tadasuke Ooka; Takehiko Itoh; Akira Sawaguchi; Atsushi Iguchi; Keisuke Nakayama; Tetsuya Hayashi
PLOS PATHOGENS, May 2009, [Reviewed] - A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
Shana R. Leopold; Vincent Magrini; Nicholas J. Holt; Nurmohammad Shaikh; Elaine R. Mardis; Joseph Cagno; Yoshitoshi Ogura; Atsushi Iguchi; Tetsuya Hayashi; Alexander Mellmann; Helge Karch; Thomas E. Besser; Stanley A. Sawyer; Thomas S. Whittam; Phillip I. Tarr
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, May 2009, [Reviewed] - Conversion of cholic acid and chenodeoxycholic acid into their 7-oxo derivatives by Bacteroides intestinalis AM-1 isolated from human feces
Satoru Fukiya; Miki Arata; Hiroko Kawashima; Daisuke Yoshida; Maki Kaneko; Kimiko Minamida; Jun Watanabe; Yoshio Ogura; Kiyohisa Uchida; Kikuji Itoh; Masaru Wada; Susumu Ito; Atsushi Yokota
FEMS MICROBIOLOGY LETTERS, Apr. 2009, [Reviewed] - Complete Genome Sequence and Comparative Genome Analysis of Enteropathogenic Escherichia coli O127:H6 Strain E2348/69
Atsushi Iguchi; Nicholas R. Thomson; Yoshitoshi Ogura; David Saunders; Tadasuke Ooka; Ian R. Henderson; David Harris; M. Asadulghani; Ken Kurokawa; Paul Dean; Brendan Kenny; Michael A. Quail; Scott Thurston; Gordon Dougan; Tetsuya Hayashi; Julian Parkhill; Gad Frankel
JOURNAL OF BACTERIOLOGY, Jan. 2009, [Reviewed] - Complete Genome Sequence and Comparative Analysis of the Wild-type Commensal Escherichia coli Strain SE11 Isolated from a Healthy Adult
Kenshiro Oshima; Hidehlro Toh; Yoshitoshi Ogura; Hiroyuki Sasamoto; Hidetoshi Morita; Sang-Hee Park; Tadasuke Ooka; Sunao Iyoda; Todd D. Taylor; Tetsuya Hayashi; Kikuji Itoh; Masahira Hattori
DNA RESEARCH, Dec. 2008, [Reviewed] - Systematic Identification and Sequence Analysis of the Genomic Islands of the Enteropathogenic Escherichia coli Strain B171-8 by the Combined Use of Whole-Genome PCR Scanning and Fosmid Mapping
Yoshitoshi Ogura; Hiroyuki Abe; Keisuke Katsura; Ken Kurokawa; Md Asadulghani; Atsushi Iguchi; Tadasuke Ooka; Keisuke Nakayama; Atsushi Yamashita; Masahira Hattori; Toru Tobe; Tetsuya Hayashi
JOURNAL OF BACTERIOLOGY, Nov. 2008, [Reviewed] - The Whole-genome Sequencing of the Obligate Intracellular Bacterium Orientia tsutsugamushi Revealed Massive Gene Amplification During Reductive Genome Evolution
Keisuke Nakayama; Atsushi Yamashita; Ken Kurokawa; Takuya Morimoto; Michihiro Ogawa; Masahiro Fukuhara; Hiroshi Urakami; Makoto Ohnish; Ikuo Uchiyama; Yoshitoshi Ogura; Tadasuke Ooka; Kenshiro Oshima; Akira Tamura; Masahira Hattori; Tetsuya Hayashi
DNA RESEARCH, Aug. 2008, [Reviewed] - Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli
Hiroyuki Abe; Akira Miyahara; Taku Oshima; Kosuke Tashiro; Yoshitoshi Ogura; Satoru Kuhara; Naotake Ogasawara; Tetsuya Hayashi; Toru Tobe
DNA RESEARCH, Feb. 2008, [Reviewed] - Genomic comparison of the O-antigen biosynthesis gene clusters of Escherichia coli O55 strains belonging to three distinct lineages
Atsushi Iguchi; Tadasuke Ooka; Yoshitoshi Ogura; Keisuke Nakayama; Gad Frankel; Tetsuya Hayashi
MICROBIOLOGY-SGM, Feb. 2008, [Reviewed] - Distribution, functional expression, and genetic organization of Cif, a phage-encoded type III-secreted effector from enteropathogenic and enterohemorrhagic Escherichia coli
Estelle Loukiadis; Rika Nobe; Sylvia Herold; Clara Tramuta; Yoshitoshi Ogura; Tadasuke Ooka; Stefano Morabito; Monique Kerouredan; Hubert Brugere; Herbert Schmidt; Tetsuya Hayashi; Eric Oswald
JOURNAL OF BACTERIOLOGY, Jan. 2008, [Reviewed] - Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
Ken Kurokawa; Takehiko Itoh; Tomomi Kuwahara; Kenshiro Oshima; Hidehiro Toh; Atsushi Toyoda; Hideto Takami; Hidetoshi Morita; Vineet K. Sharma; Tulika P. Srivastava; Todd D. Taylor; Hideki Noguchi; Hiroshi Mori; Yoshitoshi Ogura; Dusko S. Ehrlich; Kikuji Itoh; Toshihisa Takagi; Yoshiyuki Sakaki; Tetsuya Hayashi; Masahira Hattori
DNA RESEARCH, Aug. 2007, [Reviewed] - Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method
Shu Ishikawa; Yoshitoshi Ogura; Mika Yoshimura; Hajime Okumura; Eunha Cho; Yoshikazu Kawai; Ken Kurokawa; Taku Oshima; Naotake Ogasawara
DNA RESEARCH, Aug. 2007, [Reviewed] - Characterization of tccP2 carried by atypical enteropathogenic Escherichia coli
Tadasuke Ooka; Monica A. M. Vieira; Yoshitoshi Ogura; Lothar Beutin; Roberto La Ragione; Pauline M. van Diemen; Mark P. Stevens; Ilknur Aktan; Shaun Cawthraw; Angus Best; Rodrigo T. Hernandes; Gladys Krause; Tania A. T. Gomes; Tetsuya Hayashi; Gad Frankel
FEMS MICROBIOLOGY LETTERS, Jun. 2007, [Reviewed] - TccP2-mediated subversion of actin dynamics by EPEC 2 - a distinct evolutionary lineage of enteropathogenic Escherichia coli
Andrew D. Whale; Rodrigo T. Hernandes; Tadasuke Ooka; Lothar Beutin; Stephanie Schuller; Junkal Garmendia; Lynette Crowther; Mnica A. M. Vieira; Yoshitoshi Ogura; Gladys Krause; Alan D. Ph Illips; Tania A. T. Gomes; Tetsuya Hayashi; Gad Frankel
MICROBIOLOGY-SGM, Jun. 2007, [Reviewed] - TccP2 of O157 : H7 and non-O157 enterohemorrhagic Escherichia coli (EHEC): Challenging the dogma of EHEC-induced actin polymerization
Yoshitoshi Ogura; Tadasuke Ooka; Andrew Whale; Junkal Garmendia; Lothar Beutin; Sharon Tennant; Gladys Krause; Stefano Morabito; Isabel Chinen; Toru Tobe; Hiroyuki Abe; Rosangela Tozzoli; Alfredo Caprioli; Marta Rivas; Roy Robins-Browne; Tetsuya Hayashi; Gad Frankel
INFECTION AND IMMUNITY, Feb. 2007, [Reviewed] - Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes
Yoshitoshi Ogura; Tadasuke Ooka; Asadulghani; Jun Terajima; Jean-Philippe Nougayrede; Ken Kurokawa; Kousuke Tashiro; Toru Tobe; Keisuke Nakayama; Satoru Kuhara; Eric Oswald; Haruo Watanabe; Tetsuya Hayashi
GENOME BIOLOGY, 2007, [Reviewed] - ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes
N Nakanishi; H Abe; Y Ogura; T Hayashi; K Tashiro; S Kuhara; N Sugimoto; T Tobe
MOLECULAR MICROBIOLOGY, Jul. 2006, [Reviewed] - Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai oligoDNA Microarray and the Whole Genome PCR Scanning
Yoshitoshi Ogura; Ken Kurokawa; Tadasuke Ooka; Kousuke Tashiro; Toru Tobe; Makoto Ohnishi; Keisuke Nakayama; Takuya Morimoto; Jun Terajima; Haruo Watanabe; Satoru Kuhara; Tetsuya Hayashi
DNA RESEARCH, Feb. 2006, [Reviewed] - Bacillus subtilis YabA is involved in determining the timing and synchrony of replication initiation
M Hayashi; Y Ogura; EJ Harry; N Ogasawara; S Moriya
FEMS MICROBIOLOGY LETTERS, Jun. 2005, [Reviewed] - [Genome analysis of enterohaemorrhagic E. coli O157 to the epidemiological study of O157 infections].
Ooka T; Ogura Y; Hayashi T
Rinsho Biseibutsu Jinsoku Shindan Kenkyukai shi = JARMAM : Journal of the Association for Rapid Method and Automation in Microbiology, 2005, [Reviewed] - Increasing the ratio of Soj to Spo0J promotes replication initiation in Bacillus subtilis
Y Ogura; N Ogasawara; EJ Harry; S Moriya
JOURNAL OF BACTERIOLOGY, Nov. 2003, [Reviewed] - Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning
M Ohnishi; J Terajima; K Kurokawa; K Nakayama; T Murata; K Tamura; Y Ogura; H Watanabe; T Hayashi
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Dec. 2002, [Reviewed] - Autoregulation of the dnaA-dnaN operon and effects of DnaA protein levels on replication initiation in Bacillus subtilis
Y Ogura; Y Imai; N Ogasawara; S Moriya
JOURNAL OF BACTERIOLOGY, Jul. 2001, [Reviewed]
- 比較ゲノム解析によるESBL産生Aeromonas hydrophilaの耐性遺伝子伝播機構の解明
奥野 未来; 杉山 美千代; 星子 裕貴; 山本 武司; 浅井 鉄夫; 小椋 義俊
日本細菌学雑誌, Jun. 2024 - Genome analysis reveals mechanisms of resistance gene transfer in ESBL-producing Aeromonas
奥野未来; 杉山美千代; 星子裕貴; 山本武司; 浅井鉄夫; 小椋義俊
日本細菌学雑誌(Web), 2024 - RNAで細菌を制御する(Regulating with RNA in Bacteria sRNA regulates pathogenicity during persistent infection of Helicobacter)
木下 遼; 氣駕 恒太朗; 大坪 亮太; 小椋 義俊; 眞田 貴人; 岡野 徳壽; 鈴木 敏彦; 山岡 吉生; 林 哲也; 三室 仁美
日本細菌学雑誌, Jan. 2020 - 胆汁酸変換菌の相互作用によるウルソコール酸からデオキシコール酸への新たな変換経路の同定とその変換機構の解明
北川更; TAWTHEP Sarinya; 吹谷智; 小椋義俊; 林哲也; 横田篤
日本乳酸菌学会誌, 2019 - Metagenomic approach to the identification of causative agents of a polymicrobial disease
後藤恭宏; 梶谷嶺; 小椋義俊; 伊藤武彦; 三澤尚明; 林哲也
日本細菌学雑誌(Web), 2019 - 機能性糖質によるラット盲腸内細菌叢の改変に基づいたデオキシコール酸生成菌と相互作用する腸内細菌種の同定
吹谷智; 佐竹実菜子; 佐藤昌直; 石塚敏; 小椋義俊; 林哲也; 横田篤
日本乳酸菌学会誌, 2019 - ブルーリ潰瘍の原因菌Mycobacterium ulcerans subsp. shinshuenseの比較ゲノム解析
吉田 光範; 星野 仁彦; 宮本 友司; 小椋 義俊; 林 哲也; 石井 則久
結核, Apr. 2018 - ブルーリ潰瘍の原因菌Mycobacterium ulcerans subsp. shinshuenseの比較ゲノム解析
吉田 光範; 中永 和枝; 宮本 友司; 小椋 義俊; 林 哲也; 石井 則久; 星野 仁彦
日本細菌学雑誌, Feb. 2018 - C型とD型ボツリヌス毒素変換ファージの解析(Analysis of botulinum neurotoxin-converting phages in Clostridium botulinum types C and D)
阪口 義彦; 内山 淳平; 小椋 義俊; 後藤 和義; 山本 由弥子; 松崎 茂展; 山口 明日美; 林 哲也; 小熊 惠二; 林 俊治
日本細菌学雑誌, Feb. 2018 - B6型ボツリヌス毒素遺伝子をコードするプラスミドの解析(Analysis of botulinum neurotoxin type B6 gene-encoding plasmid in Clostridium botulinum type B)
阪口 義彦; 内山 淳平; 細見 晃司; 幸田 知子; 小椋 義俊; 林 哲也; 林 俊治; 小崎 俊司; 向本 雅郁
日本細菌学雑誌, Feb. 2017 - 結核患者情報は菌株の遺伝多型(VNTR型別)解析に基づく感染源推定に影響を与えるか?
和田 崇之; 山本 香織; 山本 太郎; 阿彦 忠之; 瀬戸 順次; 林 哲也; 小椋 義俊
日本公衆衛生学会総会抄録集, Oct. 2016 - ClofazimineとBedaquiline両薬剤耐性を示すMycobacterium avium実験室株の解析
星野 仁彦; 中田 登; 小椋 義俊; 林 哲也; 石井 則久
日本呼吸器学会誌, Mar. 2016 - 結核・抗酸菌症に関する最近のprovocativeな研究 ルシフェラーゼ発現リコンビナントBCGによる新規結核薬の迅速スクリーニング系の確立と実践(Latest provocative studies on tuberculosis and mycobacterial infections A new screen for TB drug candidates utilizing a luciferase-expressing recombinant BCG)
尾関 百合子; 山口 雄大; Enany Shymaa; 五十嵐 雅之; 西内 由紀子; 岡 真優子; 岩本 朋忠; 小椋 義俊; 林 哲也; 立石 善隆; 西山 晃史; 松本 壮吉
日本細菌学雑誌, Feb. 2016 - R-spondin1 Promotes Paneth Cell Growth, Maintains Intestinal Microbial Ecology, and Ameliorates GvHD
Eiko Hayase; Daigo Hashimoto; Kiminori Nakamura; Yoshitoshi Ogura; Tetsuya Hayashi; Ken Kurokawa; Tokiyoshi Ayabe; Takanori Teshima
BLOOD, Dec. 2015 - Description of a novel marine bacterium, Vibrio hyugaensis sp. nov., based on genomic and phenotypic characterization (vol 38, pg 300, 2015)
Yoshiko Urbanczyk; Yoshitoshi Ogura; Tetsuya Hayashi; Henryk Urbanczyk
SYSTEMATIC AND APPLIED MICROBIOLOGY, Oct. 2015 - Functional diversification in bacterial rhodopsins: a new class of light-driven Cl- pumps in marine flavobacteria.
S. Yoshizawa; Y. Kumagai; H. Kim; Y. Ogura; T. Hayashi; W. Iwasaki; E. F. DeLong; K. Kogure
Proc. Natl. Acad. Sci. USA, Mar. 2014 - リコンビナントBCG(rBCG)を用いた迅速スクリーニング法による抗結核薬の探索と同定
尾関 百合子; 西内 由紀子; 小椋 義俊; 岩本 朋忠; 林 哲也; 岡 真優子; 仁木 満美子; 立石 善隆; 平山 幸雄; 松本 壮吉
日本細菌学雑誌, Feb. 2013 - 高病原性非結核性抗酸菌臨床菌株のゲノムシーケンス(Draft Genome Sequence of A Hypervirulent Clinical Mycobacterium intracellulare Strain)
立石 善隆; 平山 幸雄; 尾関 百合子; 西内 由紀子; 仁木 満美子; 小椋 義俊; 林 哲也; 小林 和夫; 松本 壮吉
日本細菌学雑誌, Feb. 2013 - 腸管出血性大腸菌における病原性のゲノム進化
小椋義俊; 林哲也
感染・炎症・免疫, Sep. 2012 - 高病原性Mycobacterium intracellulare臨床分離株のドラフトゲノム解析
立石 善隆; 小椋 義俊; 平山 幸雄; 尾関 百合子; 西内 由紀子; 仁木 満美子; 林 哲也; 小林 和夫; 松本 壮吉; 王 亜軍; 北田 清悟; 前倉 亮治
日本細菌学雑誌, Feb. 2012 - 腸管出血性大腸菌O111の進化と病原性
小椋義俊; 大岡唯祐; 林哲也
神経内科, Feb. 2012 - Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR-based fingerprinting
J. G. Mainil; M. Bardiau; T. Ooka; Y. Ogura; K. Murase; Y. Etoh; S. Ichihara; K. Horikawa; G. Buvens; D. Pierard; T. Itoh; T. Hayashi
JOURNAL OF APPLIED MICROBIOLOGY, Sep. 2011 - ゲノム解析から見えてきた腸管出血性大腸菌の毒素及び病原因子の新知見
小椋義俊; 大岡唯祐; 林哲也
化学療法の領域, May 2009 - Global regulation by horizontally transferred regulators establishes the pathogenicity of escherichia coli
Hiroyuki Abe; Akira Miyahara; Taku Oshima; Kosuke Tashiro; Yoshitoshi Ogura; Satoru Kuhara; Naotake Ogasawara; Tetsuya Hayashi; Toru Tobe
DNA Research, 2008 - Phage Induction and Prophage-prophage Interaction in the Prophage-pool of O157 Sakai Genome
Asadulghani; OGURA Yoshitoshi; IGUCHI Atsushi; NAKAYAMA Keisuke; OOKA Tadasuke; HAYASHI Tetsuya
日本細菌学雑誌, 25 Feb. 2007 - EHEC O157とnon-O157 EHEC(O26, O111, O103)の比較ゲノム解析
小椋 義俊; 大岡 唯祐; Asadulghani; 井口 純; 黒川 顕; 戸邊 亨; 安倍 裕順; 児玉 年央; 中山 恵介; 林 哲也
日本細菌学雑誌, 25 Feb. 2007 - 感染症 基礎と臨床の接点 大腸菌O157のゲノム研究とその応用
大岡 唯祐; 小椋 義俊; 林 哲也
JARMAM, Dec. 2005 - 腸管出血性大腸菌のゲノムの特徴
大岡 唯祐; 小椋 義俊; 林 哲也
化学療法の領域, Sep. 2004 - 腸管出血性大腸菌のゲノム解析
小椋 義俊; 林 哲也
ゲノム医学, Mar. 2004
- 腸管出血性大腸菌における病原性のゲノム進化
小椋義俊; 林哲也, Joint work
感染・炎症・免疫, Sep. 2012, Not reviewed - 第4章 新規ゲノム配列決定編 細菌ゲノム. 細胞工学別冊 次世代シークエンサー 目的別アドバンストメソッド
秀潤社, Sep. 2012, Not reviewed
9784780908558 - 腸管出血性大腸菌O111の進化と病原性
小椋義俊; 大岡唯祐; 林哲也, Joint work
神経内科, Feb. 2012, Not reviewed - 腸管出血性大腸菌と腸管病原性大腸菌のゲノム解読と病原性進化メカニズムの解明.
小椋義俊, Single work
日本細菌学雑誌, Oct. 2011, Not reviewed - 腸内共生系のバイオサイエンス
丸善出版株式会社, May 2011, Not reviewed
9784621083611 - ゲノム解析から見えてきた腸管出血性大腸菌の毒素及び病原因子の新知見
小椋義俊; 大岡唯祐; 林哲也, Joint work
化学療法の領域, May 2009, Not reviewed - Genomic view on the evolution of enterohemorrhagic Escherichia coli (In Evolutionary Biology of Bacterial and Fungal Pathogens.)
ASM Press, Washington, D.C., Nov. 2007, Not reviewed - 大腸菌O157のゲノム研究とその応用
大岡 唯祐; 小椋 義俊; 林 哲也, Joint work
臨床微生物迅速診断研究会誌, Jun. 2005, Not reviewed - 腸管出血性大腸菌のゲノムの特徴
大岡 唯祐; 小椋 義俊; 林 哲也, Joint work
化学療法の領域, Sep. 2004, Not reviewed - 腸管出血性大腸菌のゲノム解析
小椋 義俊; 林 哲也
ゲノム医学, Mar. 2004, Not reviewed
- An Outbreak of Skin Infection due to Community Acquired-MRSA that Occurred among the Women Who Gave Birth in a Maternity Clinic and their Families
Tajiri Akihiko; Shimauchi Chieko; Katahira Katsuyuki; Gotoh Yasuhiro; Shigeta Mari; Kawaguchi Makiko; Tateyama Sunao; Ogura Yoshitoshi; Hayashi Tetsuya
The Japanese Journal of Dermatology, 2018, Japanese Dermatological Association - 胆汁酸と腸内フローラ：メタボリックシンドローム発症との関連性.
日本農芸化学会2014年度大会, 2014 - Analysis of botulinum neurotoxin type G gene-encoding plasmid in Clostridium argentinense.
第87回日本細菌学会総会, 2014 - Helicobacter cinaedi PAGU611株と近縁菌種間の機能面での比較ゲノム解析.
第87回日本細菌学会総会, 2014 - ESBL産生腸管凝集性大腸菌(EAEC)の分子疫学解析.
第87回日本細菌学会総会, 2014 - ブタ由来気管支敗血症菌S798株のゲノム解析.
第87回日本細菌学会総会, 2014 - Extensive phylogenomics revealed a clonal expansion of EHEC O26 in Japan.
第87回日本細菌学会総会, 2014 - A systematic functional analysis of unknown genes on the Stx2 phage of E. coli O157:H7.
第87回日本細菌学会総会, 2014 - Genome comparison of Spotted fever group in Japan ; R. japonica and R. heilongjiangensis.
第87回日本細菌学会総会, 2014 - ファイロゲノミクスによる腸管出血性大腸菌の優勢系統群および志賀毒素高産生性系統群の同定.
第8回日本ゲノム微生物学会年会, 2014 - ウシとヒト由来Treponema phagedenisのゲノム比較
第8回日本ゲノム微生物学会年会, 2014 - O145, O121, O165 EHECのゲノム解析.
第8回日本ゲノム微生物学会年会, 2014 - A systematic functional analysis of unknown genes on the Stx2 phage of E. coli O157:H7.
第8回日本ゲノム微生物学会年会, 2014 - Comparative genome analysis of Spotted fever group Rickettsia in Japan ; R. japonica and R. heilongjiangensis.
第8回日本ゲノム微生物学会年会, 2014 - Whole Genome Shotgunを用いた病原菌に関する疫学研究のための解析手法の開発.
第8回日本ゲノム微生物学会年会, 2014 - メタゲノム用de novoアセンブラの開発およびIlluminaデータを用いたベンチマーク
第8回日本ゲノム微生物学会年会, 2014 - 腸管出血性大腸菌に存在するSmall Regulatory RNA Esr41の機能解析
第8回日本ゲノム微生物学会年会, 2014 - Whole genome sequencingを用いた分子疫学と、その臨床応用
第32回宮崎感染症研究会, 2014 - ビブリオ科細菌の分子系統解析.
第47回腸炎ビブリオシンポジウム, 2013 - Helicobacter cinaediと近縁菌種間の機能面での比較ゲノム解析.
第50回日本細菌学会中部支部会, 2013 - 日本紅斑熱リケッチアRickettsia japonica及び紅斑熱群リケッチアR. heilongjiangensisのゲノム及びゲノム比較解析.
第66回日本細菌学会九州支部総会, 2013 - Polymicrobial diseaseであるウシ趾乳頭腫症から分離されたTreponema phagedenisのゲノムおよびヒト由来株とのゲノム比較解析.
第66回日本細菌学会九州支部総会, 2013 - EHEC O26 におけるゲノムアダプテーション解析.
第17回腸管出血性大腸菌感染症研究会, 2013 - 新興病原体Escherichia albertii のゲノム及びゲノム比較解析.
第17回腸管出血性大腸菌感染症研究会, 2013 - EHEC O157 の志賀毒素産生に対するIS629 の影響.
第17回腸管出血性大腸菌感染症研究会, 2013 - 高解像度系統解析による腸管出血性大腸菌O157のStx2高産生性系統の同定
第86回日本細菌学会総会, 2013 - 新規下痢原性病原菌Escherichia albertiiのゲノム解析
第86回日本細菌学会総会, 2013 - ウシ趾乳頭腫症由来株Treponema phagedenisとヒト由来株の比較ゲノム解析
第86回日本細菌学会総会, 2013 - 歯周病原菌Prevotella intermedia臨床分離株OMA14の全ゲノム配列決定
第86回日本細菌学会総会, 2013 - 高病原性非結核性抗酸菌臨床菌株のゲノムシーケンス
第86回日本細菌学会総会, 2013 - C型ボツリヌス毒素変換ファージのコアゲノムの探索
第86回日本細菌学会総会, 2013 - Helicobacter cinaedi PAGU611株の全ゲノム配列決定ならびに比較ゲノム解析
第86回日本細菌学会総会, 2013 - リコンビナントBCG(rBCG)を用いた迅速スクリーニング法による抗結核薬の探索と同定
第86回日本細菌学会総会, 2013 - ブタから分離された大腸菌における腸管出血性大腸菌O157プロファージ様エレメントの分布
第86回日本細菌学会総会, 2013 - 腸管出血性大腸菌O26におけるゲノムアダプテーション解析
第7回日本ゲノム微生物学会年会, 2013 - Escherichia属の新菌種E. albertiiのゲノム解析.
第7回日本ゲノム微生物学会年会, 2013 - ウシ趾乳頭腫症病変部から分離されたTreponema phagedenisのゲノム解析
第7回日本ゲノム微生物学会年会, 2013 - Toward the creating marine microbial cell factory for biofuel production
International Symposium on Genome Sciene “Expanding Frontiers of Genome Science”, 2013 - Genome Analysis of Vibrio harveyi Strain S20: Detection and genome feature of the 3rd replicon.
International Symposium on Genome Sciene “Expanding Frontiers of Genome Science”, 2013 - Bile acid is a host factor that regulates the composition of the cecal microbiota in rats.
Probiotics2012 (International Conference and Exhibition on Probiotics-2012), 2012 - ブタから分離された毒素原性大腸菌におけるIS-excision enhancerの分布
第154回日本獣医学会学術集会, 2012 - O157 Stx2 phageの包括的ゲノム比較・機能解析により明らかとなったStx2高産生型phagenの存在
第16回腸管出血性大腸菌感染症研究会, 2012 - 新興病原体Escherichia albertiiのゲノム解析
第16回腸管出血性大腸菌感染症研究会, 2012 - 動物由来病原性大腸菌におけるIS-excision enhancerの分布
第16回腸管出血性大腸菌感染症研究会., 2012 - Molecular Characterization of Gene Cluster Responsible for Hydrogen Evolution in Vibrio tritonius AM2T.
The 9th Asia-Pacific Marine Biotechnology Conference, 2012 - 宮崎大学フロンティア科学実験総合センターにおけるシーケンシング支援活動
NGS現場の会 第2回研究会, 2012 - Significant prevalence of Escherichia albertii among the strains identified as enteropathogenic and enterohemorrhagic E. coli and the presence of Shiga toxin-producing E. albertii strains.
VTEC 2012: 8th International Symposium on Shiga Toxin (Verocytotoxin) producing Escherichia coli infections, 2012 - Comparative genomics of Stx2 prophages in O157:H7
VTEC 2012: 8th International Symposium on Shiga Toxin (Verocytotoxin) producing Escherichia coli infections, 2012 - Origination of new Stx phages by recombination between Stx1 and Stx2 phage genomes in Escherichia coli O157.
VTEC 2012 8th International Symposium on Shiga Toxin (Verocytotoxin) producing Escherichia coli infections, 2012 - Bile acid is a host factor that regulates the composition of the cecal microbiota in rats.
2nd ENGIHR Workshop., 2012 - 志賀毒素バリアントStx2fの伝播様式の解析.
第85回日本細菌学会総会, 2012 - ウシ趾乳頭腫症由来Treponema phagedenis のゲノム特性と比較ゲノム解析
第85回日本細菌学会総会, 2012 - Functional analysis of the genes in Sp5, the Stx2 phage of O157:H7 Sakai.
第85回日本細菌学会総会, 2012 - 高病原性Mycrobacterium intracellulare臨床分離株のドラフトゲノム解析.
第85回日本細菌学会総会, 2012 - 既存のソフトウエアを駆使した実験研究者による微生物ゲノム情報解析
第85回日本細菌学会総会, 2012 - 腸管侵入性大腸菌のゲノム解析
第6回日本ゲノム微生物学会年会, 2012 - Hydrogen evolution of Vibrio tritonius sp. nov.
Vibrio2011, 2011 - ブタから分離された毒素原性大腸菌におけるIS-excision enhancerの分布.
第94回細菌学会関東支部総会, 2011 - Vibrio tritonius の水素生成遺伝子群の構造.
平成23年度日本水産学会秋季大会, 2011 - Insertion sequence-excision enhancer(IEE) removes transposable elements from bacterial genomes and induces various genomic deletions.
IUMS 2011（第84回日本細菌学会総会）, 2011 - Conjugative transposons homologous to CTnPg1.
IUMS 2011（第84回日本細菌学会総会）, 2011 - Evidence for horizontal transfer of O157-antigen biosynthesis gene clusters in multiple evolutionary iineages of Escherichia coli.
IUMS 2011（第84回日本細菌学会総会）, 2011 - Phylogenetic and intimin-subtyping analysis of enteropathogenic and enterohemorrhagic Escherichia coli strains.
IUMS 2011（第84回日本細菌学会総会）, 2011 - Genome sequence analysis of Treponema phagedenis isolated from bovine papillomatous digital dermatitis (PDD).
IUMS 2011（第84回日本細菌学会総会）, 2011 - Hemolysin E-and enterohemolysin-derived hemolytic activities of the O55/O157 and other Escherichia coli lineages.
IUMS 2011（第84回日本細菌学会総会）, 2011 - Systematic functional analysis of the genes in Sp5, the STX2 phage of O157:H7 Sakai.
IUMS 2011（第84回日本細菌学会総会）, 2011 - Comparative analysis of STX2 prophages in enterohemorrhagic Escherichia coli O-157
IUMS 2011（第84回日本細菌学会総会）, 2011 - 種々のeae遺伝子保有株におけるEscherichia albertiiの分布とその性状解析.
第64回日本細菌学会九州支部総会, 2011 - 腸管出血性大腸菌O157の志賀毒素ファージの比較解析
第5回細菌学若手コロッセウム, 2011 - Identification and genome sequencing of stx2f-positive Escherichia albertii strains.
日米コレラ日本側総会, 2011 - ゲノム解析から見えてきた腸管出血性大腸菌の病原性進化メカニズム
日本細菌学会関東支部・ICD制度協議会共催「緊急セミナー：腸管出血性大腸菌の今」, 2011 - eae遺伝子保有株におけるEscherichia albertiiの分布及びその性状とゲノム特性.
第15回腸管出血性大腸菌感染症研究会, 2011 - Systematic functional analysis of the genes in Sp5, the Stx2 phage of O157:H7 Sakai.
第15回腸管出血性大腸菌感染症研究会, 2011 - マリンビブリオによる海藻糖質からの水素生産.
第14回マリンバイオテクノロジー学会, 2011 - 病原性大腸菌O157の志賀毒素産生性に関わる遺伝的特性の解明
第5回ゲノム微生物学会年会, 2011 - 腸管出血性大腸菌O157の志賀毒素ファージの比較解析
第83回日本細菌学会総会, 2010 - 病原性大腸菌O157:H7の志賀毒素変換ファージの比較解析
第4回ゲノム微生物学会年会, 2010 - Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定
日本分子生物学会 第9回春季シンポジウム, 2009 - Identification and sequence analysis of the genomic islands of EPEC B171 by fosmid mapping
第82回日本細菌学会総会, 2009 - Fosmid mapping法とWhole genome PCR scanning法を用いた腸管病原性大腸菌B171株のgenomic islandの網羅的な同定と配列決定
第3回ゲノム微生物学会年会, 2009 - Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of Whole Genome PCR Scanning and fosmid mapping
第43回日米コレラ細菌性腸管感染症専門部会, 2008 - Systematic identification and sequence analysis of genomic islands of enteropathogenic Escherichia coli strain B171-8 by the combinational use of Whole Genome PCR Scanning and fosmid mapping.
日米コレラ日本側総会, 2008 - 腸管出血性大腸菌の進化におけるファージの役割
第81回日本細菌学会総会, 2008 - 腸腸管出血性大腸菌（O26, O111, O103）の全ゲノム解析
第2回日本ゲノム微生物学会年会, 2008 - EHEC O157とnon-O157 EHEC (O26, O111, O103)の比較ゲノム解析
第80回日本細菌学会総会, 2007 - 腸管出血性大腸菌ゲノムの比較解析
第1回日本ゲノム微生物学会年会, 2007 - Comparative genome analysis of non-O157 enterohemorrhagic Escherichia coli strains
The 41st Joint Conference US-Japan Cooperative Medical Science Program Cholera Panel, 2006 - Comparative genome analysis of O157 and non-O157 enterohemorrhagic Escherichia coli strains using the whole genome PCR scanning and the O157 oligoDNA microarray
VTEC 2006 Melbourne (6th International Symposium on Shiga Toxin (Verocytotoxin)-Producing Escherichia coli Infections),, 2006 - EHECゲノムの比較解析と全ゲノム解析の進捗状況
第10回腸管出血性大腸菌感染症シンポジウム, 2006 - 腸管出血性大腸菌ゲノムの比較解析
第79回日本細菌学会総会, 2006 - 腸管出血性大腸菌ゲノムの比較解析
第8回ワークショップ「微生物ゲノム研究のフロンティア」, 2006 - Whole Genome PCR ScanningとMicroarrayを用いた腸管出血性大腸菌ゲノムの比較解析
28回日本分子生物学会年会, 2005 - Whole Genome PCR Scanning とマイクロアレイを用いた腸管出血性大腸菌ゲノムの比較解析
第58回日本細菌学会九州支部総会, 2005 - Whole genome PCR ScanningとMicroarrayを用いたEHECゲノムの比較解析
第78回日本細菌学会総会, 2005 - Whole Genome PCR Scanningとマイクロアレイを用いたEHECゲノムの比較解析
第77回日本細菌学会総会, 2004 - 腸管出血性大腸菌ゲノムの比較解析
第6回ワークショップ「微生物ゲノム研究のフロンティア」, 2004 - マイクロアレイを用いたO157ゲノムの比較解析
第56回日本細菌学会九州支部総会, 2003 - DNAチップを用いた病原性大腸菌O157ゲノムの比較解析
第5回ワークショップ「微生物ゲノム研究のフロンティア」, 2003
- Identification of novel pathotypes of diarrheal Escherichia coli by analyzing clinical isolates in which representative virulence genes for known pathotypes were not detected.
Grant-in-Aid for Challenging Research (Exploratory)
Kurume University
30 Jul. 2020 - 31 Mar. 2023 - Analysis of emerging process of enterohemorrhagic escherichia coli
Grant-in-Aid for Scientific Research (B)
Kurume University
01 Apr. 2020 - 31 Mar. 2023 - Gut-muscle-microbiota axis in colon tumor in high-fat diet induced obesity
Grant-in-Aid for Scientific Research (C)
Kawasaki Medical School
01 Apr. 2019 - 31 Mar. 2022 - Development of a novel antimicrobial method targeting conjugation systems of drug-resistant plasmid
Grant-in-Aid for Scientific Research (C)
01 Apr. 2018 - 31 Mar. 2021 - Emerging process of Enterohemorrhagic Escherichia coli revealed by a large-scale genome analysis
Grant-in-Aid for Scientific Research (B)
Kyushu University
01 Apr. 2017 - 31 Mar. 2020 - Elucidation of genomic diversification in Group A Streptococci based on GWAS and epigenome
Grant-in-Aid for Scientific Research (B)
Kyoto University
01 Apr. 2016 - 31 Mar. 2019 - Identification and functional analysis of genes important for the activity of bifidobacteria in the intestine harboring intestinal microbiota
Grant-in-Aid for Scientific Research (B)
Hokkaido University
01 Apr. 2016 - 31 Mar. 2019 - mechanism of diversification of shiga toxin-encoding phage, from the ecological aspect
Grant-in-Aid for Challenging Exploratory Research
Kyushu University
01 Apr. 2016 - 31 Mar. 2018 - Comprehensive analysis of maintenance mechanism of forest soil microbial ecosystem by thermal disturbance
Grant-in-Aid for Scientific Research (B)
Hokkaido University
01 Apr. 2014 - 31 Mar. 2018 - Identification of high risk lineages that contain Stx2 high producing strains in enterohaemorrhagic Escherichia coli
Grant-in-Aid for Scientific Research (C)
01 Apr. 2013 - 31 Mar. 2016 - Exploration of bifidobacterial genes involved in the intestinal survival through a dynamics analysis of random transposon mutants of Bifidobacterium longum
Grant-in-Aid for Scientific Research (C)
Hokkaido University
01 Apr. 2013 - 31 Mar. 2016 - Detection of diverse aquatic microbes in lungs and blood of drowning and non-drowning victims by a metagenomic approach
Grant-in-Aid for Scientific Research (B)
University of Miyazaki
01 Apr. 2013 - 31 Mar. 2016 - Platform of large scale and high quality genomics and bioinformatics: Towards the advancement of genome sciences in academia
Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
National Institute of Genetics
01 Apr. 2010 - 31 Mar. 2016 - Analysis of shiga-toxin resistance systemin enterohemorrhagic E. coli
Grant-in-Aid for Young Scientists (B)
University of Miyazaki
2011 - 2012 - Detection of diverse aquatic microbes in blood and organs of drowning victims by a metagenomic approach
Grant-in-Aid for Young Scientists (B)
University of Miyazaki
2010 - 2011 - Escherichia coli pan-genome analysis using next-generation DNA sequencing technologies
Grant-in-Aid for Scientific Research (B)
University of Miyazaki
2008 - 2010 - Identification of genomic region that confers Stx2 producibility of Stx2phages in Escherichia coli O157.
Grant-in-Aid for Young Scientists (B)
University of Miyazaki
2008 - 2009 - Basic and applied genomics of enterohemorrhagic Escherichia coli and related enteropathogens
Grant-in-Aid for Scientific Research on Priority Areas
University of Miyazaki
2005 - 2009 - Genome analysis of bacteria inhabiting the mucosal surface of intestine
Grant-in-Aid for Scientific Research (B)
University of Miyazaki
2006 - 2007 - Comprehensive analyses of bacterial pathogenesis based on the genome information
Grant-in-Aid for Scientific Research on Priority Areas
2002 - 2004
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